Variant report

Variant	rs11136731
Chromosome Location	chr8:4188581-4188582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10086105	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10091031	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091134	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10094349	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10103498	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10103842	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10103969	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10104209	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10104718	0.87[ASN][1000 genomes]
rs10107472	0.96[ASN][1000 genomes]
rs10108270	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10108725	0.95[ASN][1000 genomes]
rs10108980	0.92[ASN][1000 genomes]
rs10866968	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10866969	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11136730	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12675938	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12679965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13268424	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1546356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1847570	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3947178	0.90[EUR][1000 genomes]
rs4875336	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv889946	chr8:4185227-4192206	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv438021	chr8:4185750-4196180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4171000-4188800	Weak transcription	Pancreas	Pancrea
2	chr8:4187800-4189800	Enhancers	Fetal Intestine Large	intestine
3	chr8:4188200-4188800	Enhancers	Liver	Liver
4	chr8:4188200-4190000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:4188200-4190000	Enhancers	Brain Germinal Matrix	brain
6	chr8:4188400-4190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:4188400-4190000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:4188400-4190000	Enhancers	Stomach Mucosa	stomach

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