Variant report

Variant	rs10104088
Chromosome Location	chr8:126383738-126383739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126383732..126385634-chr8:126386782..126388926,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10088674	0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10090983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094940	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100523	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105662	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	0.84[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10481154	0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996045	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28502126	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28609750	1.00[EUR][1000 genomes]
rs28620783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28786389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56704677	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57062304	1.00[EUR][1000 genomes]
rs58585963	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004396	1.00[EUR][1000 genomes]
rs73704922	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704933	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73704935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2761467	chr8:126368375-126385095	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126375400-126383800	Weak transcription	Primary T cells from cord blood	blood
2	chr8:126375400-126383800	Weak transcription	NHLF	lung
3	chr8:126375400-126385800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:126375400-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:126375600-126383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:126375600-126383800	Weak transcription	NHEK	skin
7	chr8:126377600-126383800	Weak transcription	HSMM	muscle
8	chr8:126377600-126386200	Weak transcription	Ovary	ovary
9	chr8:126380200-126385800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:126380400-126387400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:126381800-126386400	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:126382000-126391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:126382200-126383800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:126382200-126394200	Weak transcription	Thymus	Thymus
15	chr8:126382400-126383800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:126382400-126388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:126382400-126388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:126382400-126396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:126383000-126383800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:126383000-126384000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr8:126383000-126384200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:126383000-126384600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:126383000-126384800	Enhancers	Hela-S3	cervix
24	chr8:126383200-126383800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:126383200-126383800	Enhancers	NHDF-Ad	bronchial
26	chr8:126383200-126384200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:126383200-126384200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:126383200-126384200	Enhancers	Osteobl	bone
29	chr8:126383200-126384600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:126383200-126384600	Enhancers	HMEC	breast
31	chr8:126383200-126384600	Enhancers	NH-A	brain
32	chr8:126383400-126384000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr8:126383400-126384000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:126383600-126384200	Enhancers	Liver	Liver
35	chr8:126383600-126384200	Flanking Active TSS	A549	lung
36	chr8:126383600-126384200	Flanking Active TSS	HUVEC	blood vessel
37	chr8:126383600-126384600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:126383600-126384600	Enhancers	HepG2	liver

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