Variant report

Variant	rs28786389
Chromosome Location	chr8:126387944-126387945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126387457..126389711-chr8:126394500..126396666,2	K562	blood:
2	chr8:126383732..126385634-chr8:126386782..126388926,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10088674	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10090983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10100523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481079	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10481154	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28502126	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28609750	1.00[EUR][1000 genomes]
rs28620783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56704677	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57062304	1.00[EUR][1000 genomes]
rs58585963	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004396	1.00[EUR][1000 genomes]
rs73704922	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704933	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73704935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126375400-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:126382000-126391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:126382200-126394200	Weak transcription	Thymus	Thymus
4	chr8:126382400-126388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:126382400-126388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:126382400-126396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:126384000-126391000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:126384200-126396000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:126384200-126400200	Weak transcription	NHLF	lung
10	chr8:126384600-126388600	Weak transcription	HepG2	liver
11	chr8:126384600-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:126384600-126391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:126384800-126391000	Weak transcription	Hela-S3	cervix
14	chr8:126386400-126388800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:126386600-126391000	Weak transcription	A549	lung

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