Variant report

Variant	rs10104525
Chromosome Location	chr8:61626087-61626088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61625249..61627166-chr8:61648012..61650874,2	MCF-7	breast:
2	chr8:61625213..61627892-chr8:61636447..61639072,2	K562	blood:
3	chr8:61619832..61624344-chr8:61624507..61628732,6	MCF-7	breast:
4	chr8:61590503..61594203-chr8:61625080..61629360,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10106752	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1017861	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1017862	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10283352	0.88[AMR][1000 genomes]
rs13264416	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1483208	0.80[AMR][1000 genomes]
rs28600309	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28710955	0.82[AMR][1000 genomes]
rs35331770	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4288413	0.81[AMR][1000 genomes]
rs4738813	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4738814	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4738817	0.83[AMR][1000 genomes]
rs7011801	0.81[AMR][1000 genomes]
rs900503	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs900504	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv6219	chr8:61599770-61644558	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61603400-61626200	Weak transcription	Fetal Thymus	thymus
2	chr8:61607400-61627000	Weak transcription	Spleen	Spleen
3	chr8:61615600-61644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:61621200-61646400	Weak transcription	Fetal Brain Male	brain
5	chr8:61621400-61626200	Weak transcription	Fetal Stomach	stomach
6	chr8:61621400-61627200	Weak transcription	Stomach Mucosa	stomach
7	chr8:61621400-61632200	Weak transcription	HepG2	liver
8	chr8:61621600-61626200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:61621600-61626200	Weak transcription	Adipose Nuclei	Adipose
10	chr8:61621600-61626200	Weak transcription	Liver	Liver
11	chr8:61621600-61626200	Weak transcription	Fetal Intestine Small	intestine
12	chr8:61621600-61626200	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:61621600-61626200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:61621600-61626400	Weak transcription	Aorta	Aorta
15	chr8:61621600-61626600	Weak transcription	Lung	lung
16	chr8:61621600-61626600	Weak transcription	Pancreas	Pancrea
17	chr8:61621600-61627200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:61621600-61628000	Weak transcription	K562	blood
19	chr8:61621600-61628200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:61621600-61628400	Weak transcription	Brain Angular Gyrus	brain
21	chr8:61621600-61634200	Weak transcription	Primary T cells from cord blood	blood
22	chr8:61621600-61636400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:61621800-61626200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:61621800-61626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:61621800-61626200	Weak transcription	Brain Germinal Matrix	brain
26	chr8:61621800-61628000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:61621800-61628400	Weak transcription	HSMMtube	muscle
28	chr8:61621800-61638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:61622000-61626200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:61622000-61626200	Weak transcription	Fetal Intestine Large	intestine
31	chr8:61622000-61626200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr8:61622000-61626200	Weak transcription	HMEC	breast
33	chr8:61622000-61626200	Weak transcription	NHEK	skin
34	chr8:61622000-61626200	Weak transcription	NHLF	lung
35	chr8:61622000-61627000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:61622000-61627200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:61622000-61628200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:61622000-61628800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:61622200-61631400	Weak transcription	Primary B cells from cord blood	blood
40	chr8:61623000-61626200	Weak transcription	Brain Anterior Caudate	brain
41	chr8:61623000-61626200	Weak transcription	Esophagus	oesophagus
42	chr8:61623000-61626200	Weak transcription	Fetal Kidney	kidney
43	chr8:61623000-61627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:61623200-61626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr8:61623200-61627400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:61623200-61628400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:61623200-61635800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:61623400-61626200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:61623400-61626200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr8:61623400-61626400	Weak transcription	Right Ventricle	heart

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