Variant report

Variant	rs10283352
Chromosome Location	chr8:61642327-61642328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61642321..61644074-chr8:61646813..61649325,2	MCF-7	breast:
2	chr8:61637532..61640653-chr8:61641197..61643010,3	MCF-7	breast:
3	chr8:61640669..61642679-chr8:61647528..61649316,2	MCF-7	breast:
4	chr8:61577127..61579062-chr8:61640050..61642549,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10092214	1.00[YRI][hapmap]
rs10104525	0.88[AMR][1000 genomes]
rs10106752	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1017861	0.95[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1017862	0.95[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12680437	1.00[YRI][hapmap]
rs13253647	1.00[YRI][hapmap]
rs13264416	0.92[AMR][1000 genomes]
rs13280978	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473446	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483208	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17826359	1.00[YRI][hapmap]
rs2056415	1.00[YRI][hapmap]
rs2326569	1.00[YRI][hapmap]
rs2326570	1.00[YRI][hapmap]
rs2326571	1.00[YRI][hapmap]
rs2680297	1.00[YRI][hapmap]
rs28600309	0.87[AMR][1000 genomes]
rs28609390	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28710955	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2946154	1.00[YRI][hapmap]
rs35168272	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35331770	0.89[AMR][1000 genomes]
rs3814483	1.00[YRI][hapmap]
rs4237036	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4288413	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4738813	0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs4738814	0.86[AMR][1000 genomes]
rs4738816	0.86[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs4738817	1.00[YRI][hapmap]
rs4738826	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738828	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4738829	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs617834	1.00[YRI][hapmap]
rs652422	1.00[YRI][hapmap]
rs671204	1.00[YRI][hapmap]
rs7000166	1.00[YRI][hapmap]
rs7011801	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013249	1.00[YRI][hapmap]
rs7815543	1.00[YRI][hapmap]
rs7822621	1.00[YRI][hapmap]
rs876957	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs900503	0.86[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs900504	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv6219	chr8:61599770-61644558	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61615600-61644400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:61621200-61646400	Weak transcription	Fetal Brain Male	brain
3	chr8:61627800-61644400	Weak transcription	Fetal Kidney	kidney
4	chr8:61634400-61643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:61634400-61643400	Weak transcription	HepG2	liver
6	chr8:61634800-61647000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:61635000-61654200	Weak transcription	Fetal Intestine Small	intestine
8	chr8:61636800-61644400	Weak transcription	Fetal Brain Female	brain
9	chr8:61636800-61644400	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:61637000-61644200	Weak transcription	Brain Germinal Matrix	brain
11	chr8:61637000-61648600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:61637000-61648600	Weak transcription	HSMM	muscle
13	chr8:61637000-61651200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:61637000-61654600	Weak transcription	Hela-S3	cervix
15	chr8:61637600-61644400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:61637800-61643400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:61637800-61644400	Weak transcription	Brain Anterior Caudate	brain
18	chr8:61637800-61647600	Weak transcription	K562	blood
19	chr8:61638000-61644400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:61638400-61643600	Weak transcription	Brain Angular Gyrus	brain
21	chr8:61638400-61643800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:61638400-61645000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:61638400-61648400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:61638600-61643400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:61638600-61643600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:61638600-61643600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr8:61638600-61643800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:61638600-61644000	Weak transcription	Primary T cells from cord blood	blood
29	chr8:61638600-61644200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:61638600-61644400	Weak transcription	Right Atrium	heart
31	chr8:61638600-61644800	Weak transcription	Lung	lung
32	chr8:61638600-61644800	Weak transcription	Pancreas	Pancrea
33	chr8:61638600-61648400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr8:61638600-61648400	Weak transcription	Gastric	stomach
35	chr8:61638600-61648400	Weak transcription	Stomach Mucosa	stomach
36	chr8:61638600-61648600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr8:61638600-61651200	Weak transcription	Right Ventricle	heart
38	chr8:61638600-61654000	Weak transcription	NHEK	skin
39	chr8:61638600-61664200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:61639000-61643600	Weak transcription	Brain Substantia Nigra	brain
41	chr8:61639000-61644800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:61639400-61644400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:61639400-61644800	Weak transcription	Psoas Muscle	Psoas
44	chr8:61639400-61646800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr8:61639400-61647200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr8:61639400-61647800	Weak transcription	GM12878-XiMat	blood
47	chr8:61639400-61648400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:61639600-61643600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:61639600-61643600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:61640000-61644200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links