Variant report

Variant	rs10105307
Chromosome Location	chr8:131701038-131701039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131690260..131692940-chr8:131696333..131701306,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10088420	0.86[ASN][1000 genomes]
rs10095393	0.88[EUR][1000 genomes]
rs10095479	0.85[ASN][1000 genomes]
rs10095628	0.88[EUR][1000 genomes]
rs10095820	0.85[ASN][1000 genomes]
rs10096321	0.85[ASN][1000 genomes]
rs10101790	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10107223	0.86[ASN][1000 genomes]
rs10108730	0.85[EUR][1000 genomes]
rs10112041	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993977	0.83[EUR][1000 genomes]
rs16893283	0.88[EUR][1000 genomes]
rs16893288	0.88[EUR][1000 genomes]
rs1912271	0.86[ASN][1000 genomes]
rs1912272	0.86[ASN][1000 genomes]
rs1961665	0.86[ASN][1000 genomes]
rs28870411	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4294201	0.87[ASN][1000 genomes]
rs59406705	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61580464	0.83[ASN][1000 genomes]
rs7002882	0.88[JPT][hapmap]
rs7015747	0.92[AFR][1000 genomes]
rs715679	0.86[ASN][1000 genomes]
rs72728278	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728285	0.85[EUR][1000 genomes]
rs72730003	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822131	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832079	0.88[JPT][hapmap]
rs956481	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915864	chr8:131509799-131754822	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2752684	chr8:131641096-131710094	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv612294	chr8:131645079-131923377	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131694000-131704400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:131695400-131704200	Weak transcription	NHEK	skin

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