Variant report
Variant | rs4294201 |
---|---|
Chromosome Location | chr8:131705999-131706000 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10088420 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10095393 | 0.82[EUR][1000 genomes] |
rs10095479 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10095628 | 0.82[EUR][1000 genomes] |
rs10095820 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10096321 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10098463 | 0.93[EUR][1000 genomes] |
rs10101790 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10105307 | 0.87[ASN][1000 genomes] |
rs10107223 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10108730 | 0.86[EUR][1000 genomes] |
rs10113164 | 0.93[EUR][1000 genomes] |
rs11985368 | 0.93[EUR][1000 genomes] |
rs11995981 | 0.93[EUR][1000 genomes] |
rs1509847 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16893283 | 0.89[EUR][1000 genomes] |
rs16893288 | 0.89[EUR][1000 genomes] |
rs16904337 | 0.93[EUR][1000 genomes] |
rs16904339 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1912271 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1912272 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1961665 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs28379502 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28428945 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs28430960 | 0.97[EUR][1000 genomes] |
rs28870411 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4472534 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4483174 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4560808 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs59406705 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7002882 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7004166 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs715679 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs72728275 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs72728285 | 0.86[EUR][1000 genomes] |
rs72730003 | 0.86[ASN][1000 genomes] |
rs73344752 | 0.93[EUR][1000 genomes] |
rs7822131 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7831277 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7832079 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7844774 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs952132 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs956481 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533085 | chr8:131042781-131755007 | Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv915864 | chr8:131509799-131754822 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | esv2752684 | chr8:131641096-131710094 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv612294 | chr8:131645079-131923377 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv891448 | chr8:131668278-131968469 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv831462 | chr8:131704119-131895793 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:131705000-131711200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr8:131705200-131706200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr8:131705200-131707000 | Weak transcription | NHDF-Ad | bronchial |