Variant report

Variant	rs10105766
Chromosome Location	chr8:120976352-120976353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10955945	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1106481	0.94[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1106482	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11987040	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12678916	0.87[EUR][1000 genomes]
rs1814954	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1914992	0.82[CHB][hapmap]
rs28415366	0.91[EUR][1000 genomes]
rs28658252	0.91[EUR][1000 genomes]
rs2875930	1.00[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];0.83[EUR][1000 genomes]
rs3930200	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4871028	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7006901	0.80[YRI][hapmap]
rs7010457	0.80[YRI][hapmap]
rs7823697	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7823956	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs908945	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs908946	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9297608	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10105766	NOV	cis	parietal	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120945200-120977400	Weak transcription	Fetal Kidney	kidney
2	chr8:120959800-120977400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:120964000-120977400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:120964200-120977400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:120964200-120977600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:120965000-120977400	Weak transcription	Pancreas	Pancrea
7	chr8:120968800-120977400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:120968800-120977400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:120968800-120977400	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:120968800-120977600	Weak transcription	Spleen	Spleen
11	chr8:120968800-120981800	Weak transcription	Stomach Mucosa	stomach
12	chr8:120968800-120987800	Weak transcription	Placenta	Placenta
13	chr8:120968800-120988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:120969000-120977200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:120969000-120977400	Weak transcription	Adipose Nuclei	Adipose
16	chr8:120969000-120977400	Weak transcription	Liver	Liver
17	chr8:120969000-120977400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:120969000-120977400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:120969200-120977200	Weak transcription	Fetal Intestine Large	intestine
20	chr8:120969200-120977400	Weak transcription	Primary T cells from cord blood	blood
21	chr8:120969400-120977400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:120969400-120977400	Weak transcription	Left Ventricle	heart
23	chr8:120969400-120977400	Weak transcription	Right Ventricle	heart
24	chr8:120969600-120976800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:120969600-120977400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:120969600-120977400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:120969800-120977200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:120969800-120977400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:120970600-120977400	Weak transcription	Lung	lung
30	chr8:120970600-120977400	Weak transcription	Osteobl	bone
31	chr8:120970800-120980200	Weak transcription	Psoas Muscle	Psoas
32	chr8:120971000-120977200	Weak transcription	Fetal Intestine Small	intestine
33	chr8:120971200-120977400	Weak transcription	Ovary	ovary
34	chr8:120972000-120977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:120974000-120977400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:120974400-120976600	Enhancers	Brain Hippocampus Middle	brain
37	chr8:120974400-120977400	Weak transcription	Esophagus	oesophagus
38	chr8:120974600-120976400	Enhancers	Brain Angular Gyrus	brain
39	chr8:120974600-120976400	Enhancers	Brain Anterior Caudate	brain
40	chr8:120974600-120976400	Enhancers	Brain Substantia Nigra	brain
41	chr8:120974600-120976600	Enhancers	Brain Cingulate Gyrus	brain
42	chr8:120974600-120976600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr8:120975200-120977400	Strong transcription	Fetal Stomach	stomach
44	chr8:120975600-120977400	Weak transcription	Brain Germinal Matrix	brain
45	chr8:120975800-120977400	Weak transcription	Colonic Mucosa	Colon
46	chr8:120976000-120976600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr8:120976000-120977200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:120976000-120986000	Weak transcription	Thymus	Thymus
49	chr8:120976200-120976400	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:120976200-120976600	Strong transcription	Gastric	stomach

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