Variant report

Variant	rs28658252
Chromosome Location	chr8:120986786-120986787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120978380..120980894-chr8:120986076..120988850,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10105766	0.91[EUR][1000 genomes]
rs10955945	0.84[EUR][1000 genomes]
rs1106481	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1106482	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11987040	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12678899	0.83[ASN][1000 genomes]
rs12678916	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814953	0.85[ASN][1000 genomes]
rs1814954	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1914992	0.86[ASN][1000 genomes]
rs28415366	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2875929	0.86[ASN][1000 genomes]
rs2875930	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35767723	0.86[ASN][1000 genomes]
rs3930200	0.84[EUR][1000 genomes]
rs4871028	0.83[EUR][1000 genomes]
rs7823697	0.85[EUR][1000 genomes]
rs7823956	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs908945	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs908946	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120968800-120987800	Weak transcription	Placenta	Placenta
2	chr8:120968800-120988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:120977800-120994600	Weak transcription	Fetal Lung	lung
4	chr8:120978000-120994800	Weak transcription	Esophagus	oesophagus
5	chr8:120978000-120994800	Weak transcription	Right Ventricle	heart
6	chr8:120978000-121013600	Weak transcription	Gastric	stomach
7	chr8:120978400-120993200	Weak transcription	Primary T cells from cord blood	blood
8	chr8:120978400-120993200	Weak transcription	Brain Anterior Caudate	brain
9	chr8:120979000-120990600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:120979200-120987600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:120979400-120994800	Weak transcription	Left Ventricle	heart
12	chr8:120979600-120988800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:120981600-120992600	Enhancers	Fetal Intestine Large	intestine
14	chr8:120982600-120987200	Enhancers	Fetal Intestine Small	intestine
15	chr8:120983200-120989800	Weak transcription	Small Intestine	intestine
16	chr8:120983400-120994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:120983600-120987800	Enhancers	Colon Smooth Muscle	Colon
18	chr8:120984200-120988400	Weak transcription	Liver	Liver
19	chr8:120984200-120990200	Weak transcription	Colonic Mucosa	Colon
20	chr8:120984200-120990400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:120984400-120988800	Weak transcription	Ovary	ovary
22	chr8:120984600-120987800	Weak transcription	Fetal Kidney	kidney
23	chr8:120984600-120988400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:120984600-120990400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:120984600-120990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:120984800-120988800	Weak transcription	Pancreas	Pancrea
27	chr8:120984800-120988800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:120985400-120986800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:120985400-120987200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr8:120985400-120988600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr8:120985600-120986800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:120985600-120986800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr8:120985600-120987000	Enhancers	Brain Germinal Matrix	brain
34	chr8:120985600-120987200	Enhancers	Brain Angular Gyrus	brain
35	chr8:120985600-120987200	Enhancers	Stomach Smooth Muscle	stomach
36	chr8:120985600-120996800	Enhancers	Stomach Mucosa	stomach
37	chr8:120985800-120987000	Enhancers	Adipose Nuclei	Adipose
38	chr8:120985800-120987600	Weak transcription	Psoas Muscle	Psoas
39	chr8:120986000-120986800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr8:120986000-120987600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:120986000-120994800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:120986200-120990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:120986200-120994400	Weak transcription	Right Atrium	heart
44	chr8:120986400-120987800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:120986400-120988600	Weak transcription	Brain Substantia Nigra	brain
46	chr8:120986400-120988600	Weak transcription	Fetal Muscle Leg	muscle
47	chr8:120986400-120988800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr8:120986400-120988800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:120986400-120989800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:120986400-120990200	Weak transcription	Brain Hippocampus Middle	brain

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