Variant report

Variant	rs10105799
Chromosome Location	chr8:125124887-125124888
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10090974	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10107268	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28413919	1.00[AMR][1000 genomes]
rs28521184	1.00[AMR][1000 genomes]
rs28610529	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28616090	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28625683	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28719919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28758377	1.00[AMR][1000 genomes]
rs61354499	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73332219	1.00[AMR][1000 genomes]
rs73332237	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73332239	1.00[ASN][1000 genomes]
rs73332242	1.00[ASN][1000 genomes]
rs73703948	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125119600-125129400	Enhancers	Fetal Heart	heart
2	chr8:125121800-125142000	Weak transcription	Stomach Mucosa	stomach
3	chr8:125124400-125129800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125124600-125125000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:125124600-125129800	Weak transcription	Fetal Intestine Small	intestine
6	chr8:125124800-125125200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr8:125124800-125126000	Weak transcription	Right Ventricle	heart
8	chr8:125124800-125127200	Weak transcription	Psoas Muscle	Psoas
9	chr8:125124800-125127600	Weak transcription	Left Ventricle	heart
10	chr8:125124800-125129800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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