Variant report
| Variant | rs10106148 |
|---|---|
| Chromosome Location | chr8:87715276-87715277 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TCF7L2 | chr8:87715269-87716022 | HEK293 | kidney: | n/a | chr8:87715701-87715711 chr8:87715698-87715712 chr8:87715811-87715818 chr8:87715697-87715713 chr8:87715697-87715713 chr8:87715698-87715712 chr8:87715700-87715709 chr8:87715701-87715710 |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87715050..87716703-chr8:87803465..87805909,2 | MCF-7 | breast: | |
| 2 | chr8:87715130..87716346-chr8:87797049..87798098,25 | MCF-7 | breast: | |
| 3 | chr8:87713968..87715831-chr8:90615267..90617535,2 | K562 | blood: | |
| 4 | chr8:87715109..87716653-chr8:87797088..87798149,7 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254115 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10095670 | 0.87[EUR][1000 genomes] |
| rs10105388 | 0.91[EUR][1000 genomes] |
| rs10504826 | 1.00[JPT][hapmap] |
| rs10956936 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12334406 | 0.87[EUR][1000 genomes] |
| rs16917022 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs28542956 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58212982 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6983426 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes] |
| rs6988548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6998478 | 0.87[EUR][1000 genomes] |
| rs7000661 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7004687 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7017987 | 1.00[JPT][hapmap] |
| rs7814536 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7841121 | 1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7845157 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9297940 | 1.00[JPT][hapmap] |
| rs9297961 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891151 | chr8:87690019-87776019 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026794 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv539662 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:87713800-87715600 | Weak transcription | Fetal Brain Male | brain |
