Variant report

Variant	rs7017987
Chromosome Location	chr8:87673633-87673634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10106148	1.00[JPT][hapmap]
rs10504826	0.83[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10956936	1.00[JPT][hapmap]
rs12550620	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16917022	1.00[JPT][hapmap]
rs2044009	0.81[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs4961205	0.89[ASW][hapmap];0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7000661	1.00[JPT][hapmap]
rs7004687	1.00[JPT][hapmap]
rs7832569	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs7845157	1.00[JPT][hapmap]
rs9297940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9642925	0.81[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv981963	chr8:87671867-87673955	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87673200-87673800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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