Variant report

Variant	rs4961205
Chromosome Location	chr8:87654215-87654216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12550620	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2044009	0.90[MEX][hapmap];0.89[TSI][hapmap]
rs7017987	0.89[ASW][hapmap];0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7832569	0.90[MEX][hapmap];0.89[TSI][hapmap]
rs9297940	0.91[CEU][hapmap];0.83[CHB][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv818641	chr8:87643741-87658739	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87653400-87654600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:87653600-87654800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:87653600-87654800	Enhancers	Fetal Kidney	kidney
4	chr8:87653600-87656600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:87653800-87654800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:87653800-87654800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:87653800-87656000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:87654200-87654600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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