Variant report

Variant	rs10106714
Chromosome Location	chr8:10390320-10390321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086002	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10088572	0.88[ASN][1000 genomes]
rs11250028	0.83[ASN][1000 genomes]
rs12542271	0.95[ASN][1000 genomes]
rs12549461	0.91[ASN][1000 genomes]
rs12549899	0.95[ASN][1000 genomes]
rs12674734	0.85[ASN][1000 genomes]
rs12676504	0.84[ASN][1000 genomes]
rs12676744	0.94[ASN][1000 genomes]
rs13266722	0.86[ASN][1000 genomes]
rs13266727	0.86[ASN][1000 genomes]
rs28373124	0.83[ASN][1000 genomes]
rs34356138	0.97[ASN][1000 genomes]
rs34770482	0.85[ASN][1000 genomes]
rs34999153	0.85[ASN][1000 genomes]
rs35276159	0.85[ASN][1000 genomes]
rs35427890	0.83[ASN][1000 genomes]
rs35680856	0.90[ASN][1000 genomes]
rs35847318	0.85[ASN][1000 genomes]
rs4398871	0.85[ASN][1000 genomes]
rs4404876	0.81[ASN][1000 genomes]
rs4840489	0.97[ASN][1000 genomes]
rs4841369	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4841370	0.97[ASN][1000 genomes]
rs4841371	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6986876	0.85[ASN][1000 genomes]
rs6987477	0.88[EUR][1000 genomes]
rs7007213	0.81[ASN][1000 genomes]
rs71516582	0.95[ASN][1000 genomes]
rs71516583	0.87[ASN][1000 genomes]
rs7815466	0.83[ASN][1000 genomes]
rs7820225	0.92[ASN][1000 genomes]
rs7843134	0.97[ASN][1000 genomes]
rs7846484	0.85[ASN][1000 genomes]
rs9801782	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1025251	chr8:10343591-10488557	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1026918	chr8:10359634-10390452	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10383400-10392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10388000-10390800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:10388800-10390600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:10389000-10390600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:10389200-10390800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:10389400-10397400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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