Variant report

Variant	rs10106941
Chromosome Location	chr8:35315188-35315189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10108469	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10113118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1554863	0.85[EUR][1000 genomes]
rs16883929	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1919347	0.87[EUR][1000 genomes]
rs1950045	0.85[EUR][1000 genomes]
rs2980390	0.81[EUR][1000 genomes]
rs4346988	0.95[EUR][1000 genomes]
rs62505485	0.85[EUR][1000 genomes]
rs62505489	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7825699	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35295400-35317000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:35311800-35315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:35312600-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:35314200-35316600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:35314400-35315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:35314400-35316600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:35314600-35315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links