Variant report

Variant	rs62505485
Chromosome Location	chr8:35252717-35252718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10106941	0.85[EUR][1000 genomes]
rs10108469	0.88[EUR][1000 genomes]
rs10113118	0.85[EUR][1000 genomes]
rs1528725	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1554863	1.00[EUR][1000 genomes]
rs16883929	0.88[EUR][1000 genomes]
rs1919347	0.98[EUR][1000 genomes]
rs1950045	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2056767	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2950922	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2980390	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3108620	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4346988	0.89[EUR][1000 genomes]
rs62505482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62505489	0.88[EUR][1000 genomes]
rs72633560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7825699	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1830629	chr8:35218820-35256073	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35251200-35253200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:35252000-35254000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:35252000-35254000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:35252000-35254000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:35252200-35254000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:35252200-35254000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:35252400-35253400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:35252400-35254000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:35252400-35254000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:35252400-35254000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:35252600-35253000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:35252600-35253600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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