Variant report

Variant	rs10107840
Chromosome Location	chr8:78272186-78272187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10088744	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13257595	0.90[EUR][1000 genomes]
rs17376016	0.94[EUR][1000 genomes]
rs17450583	0.81[EUR][1000 genomes]
rs34444891	0.83[EUR][1000 genomes]
rs35027038	0.80[EUR][1000 genomes]
rs35089171	0.94[EUR][1000 genomes]
rs35600134	0.81[EUR][1000 genomes]
rs35990416	0.83[EUR][1000 genomes]
rs36098832	0.83[EUR][1000 genomes]
rs4515522	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71531205	0.94[EUR][1000 genomes]
rs71531208	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891046	chr8:78265312-78311815	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891047	chr8:78265312-78322329	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891048	chr8:78271372-78322329	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78271400-78272200	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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