Variant report

Variant	rs71531205
Chromosome Location	chr8:78349261-78349262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10107840	0.94[EUR][1000 genomes]
rs13257595	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17376016	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17450583	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35085332	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35089171	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35990416	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36098832	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71531208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71531213	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891049	chr8:78325885-78565529	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3394719	chr8:78336446-78361924	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78349200-78350400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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