Variant report

Variant	rs10108090
Chromosome Location	chr8:96072189-96072190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96071292..96073984-chr8:96078454..96081250,3	K562	blood:
2	chr8:96069464..96073294-chr8:96111631..96115396,4	MCF-7	breast:
3	chr8:96070270..96072434-chr8:96124315..96127287,2	MCF-7	breast:
4	chr8:96066564..96073895-chr8:96144947..96151399,9	MCF-7	breast:
5	chr8:96070557..96072277-chr8:96168044..96170372,2	MCF-7	breast:
6	chr8:96059402..96061636-chr8:96070767..96073160,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156170	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10090057	1.00[EUR][1000 genomes]
rs10090293	1.00[EUR][1000 genomes]
rs10095570	1.00[EUR][1000 genomes]
rs10095895	1.00[EUR][1000 genomes]
rs10095935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096991	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10097190	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10097223	1.00[EUR][1000 genomes]
rs10100838	1.00[EUR][1000 genomes]
rs10101843	1.00[EUR][1000 genomes]
rs10107910	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10109093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110511	1.00[EUR][1000 genomes]
rs10111383	1.00[EUR][1000 genomes]
rs10956935	1.00[EUR][1000 genomes]
rs12334742	1.00[EUR][1000 genomes]
rs28394682	1.00[AMR][1000 genomes]
rs28395411	1.00[EUR][1000 genomes]
rs28411864	1.00[EUR][1000 genomes]
rs28538579	1.00[EUR][1000 genomes]
rs28573244	1.00[EUR][1000 genomes]
rs28620649	1.00[EUR][1000 genomes]
rs28645447	1.00[EUR][1000 genomes]
rs28689567	1.00[AMR][1000 genomes]
rs28785859	1.00[EUR][1000 genomes]
rs58297413	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59279108	1.00[EUR][1000 genomes]
rs59353178	1.00[EUR][1000 genomes]
rs60724818	1.00[EUR][1000 genomes]
rs61910718	1.00[EUR][1000 genomes]
rs7000577	1.00[EUR][1000 genomes]
rs7013875	1.00[EUR][1000 genomes]
rs73276426	1.00[AFR][1000 genomes]
rs73276462	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73276471	1.00[EUR][1000 genomes]
rs73276474	1.00[EUR][1000 genomes]
rs73276483	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73276487	1.00[EUR][1000 genomes]
rs73276494	1.00[EUR][1000 genomes]
rs73276495	1.00[EUR][1000 genomes]
rs73276497	1.00[EUR][1000 genomes]
rs73276498	1.00[EUR][1000 genomes]
rs73278508	1.00[EUR][1000 genomes]
rs73278511	1.00[EUR][1000 genomes]
rs73278524	1.00[EUR][1000 genomes]
rs7839513	1.00[EUR][1000 genomes]
rs877351	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891205	chr8:96062601-96115476	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
3	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:96042800-96072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr8:96062000-96073200	Weak transcription	Psoas Muscle	Psoas
6	chr8:96062000-96078400	Weak transcription	Small Intestine	intestine
7	chr8:96062000-96083800	Weak transcription	Fetal Brain Male	brain
8	chr8:96062200-96072600	Weak transcription	Fetal Heart	heart
9	chr8:96062400-96073000	Weak transcription	Pancreas	Pancrea
10	chr8:96062600-96072800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:96062600-96079000	Weak transcription	NHLF	lung
12	chr8:96062600-96079800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:96062800-96073000	Weak transcription	Ovary	ovary
14	chr8:96062800-96074600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:96062800-96079200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:96062800-96079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:96062800-96080200	Weak transcription	Brain Angular Gyrus	brain
18	chr8:96063200-96074200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:96063200-96078800	Weak transcription	HSMM	muscle
20	chr8:96063200-96078800	Weak transcription	NH-A	brain
21	chr8:96063400-96074200	Weak transcription	HMEC	breast
22	chr8:96063600-96072600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:96063800-96074800	Weak transcription	Fetal Kidney	kidney
24	chr8:96063800-96080400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:96063800-96081400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:96064000-96079800	Weak transcription	Brain Substantia Nigra	brain
27	chr8:96064200-96073000	Weak transcription	Left Ventricle	heart
28	chr8:96064200-96074200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr8:96064400-96078800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:96064600-96072600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:96064600-96080200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr8:96064800-96073200	Weak transcription	K562	blood
33	chr8:96064800-96079800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:96065200-96078600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr8:96065800-96073400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr8:96068800-96073400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr8:96068800-96082200	Weak transcription	Fetal Brain Female	brain
38	chr8:96070200-96072200	Strong transcription	Fetal Intestine Large	intestine
39	chr8:96070200-96072400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:96070400-96078400	Weak transcription	HUVEC	blood vessel
41	chr8:96070600-96072600	Weak transcription	HepG2	liver
42	chr8:96070600-96073200	Weak transcription	Fetal Stomach	stomach
43	chr8:96070600-96074000	Weak transcription	Placenta	Placenta
44	chr8:96070600-96074000	Weak transcription	NHEK	skin
45	chr8:96070600-96074400	Weak transcription	Hela-S3	cervix
46	chr8:96070600-96074600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:96070600-96074800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:96070600-96076800	Weak transcription	Gastric	stomach
49	chr8:96070600-96077000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:96070600-96078800	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links