Variant report

Variant	rs58297413
Chromosome Location	chr8:96051761-96051762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96050706..96053317-chr8:96055856..96057738,2	K562	blood:
2	chr8:96041538..96045239-chr8:96047596..96052623,5	K562	blood:
3	chr8:96047883..96051968-chr8:96052187..96054667,4	K562	blood:
4	chr8:96048589..96050273-chr8:96050765..96052626,2	MCF-7	breast:
5	chr8:96049863..96052563-chr8:96097765..96099435,2	MCF-7	breast:
6	chr8:96050393..96052633-chr8:96061635..96064510,2	K562	blood:
7	chr8:95960278..95962976-chr8:96049921..96052095,2	MCF-7	breast:
8	chr8:96047634..96049514-chr8:96051368..96053300,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164938	Chromatin interaction
ENSG00000253878	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10087047	1.00[AMR][1000 genomes]
rs10090057	1.00[EUR][1000 genomes]
rs10090286	1.00[AMR][1000 genomes]
rs10090293	1.00[EUR][1000 genomes]
rs10095570	1.00[EUR][1000 genomes]
rs10095895	1.00[EUR][1000 genomes]
rs10095935	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10096991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097223	1.00[EUR][1000 genomes]
rs10100838	1.00[EUR][1000 genomes]
rs10101843	1.00[EUR][1000 genomes]
rs10107910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108090	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10109093	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10110511	1.00[EUR][1000 genomes]
rs10111383	1.00[EUR][1000 genomes]
rs10956935	1.00[EUR][1000 genomes]
rs12334742	1.00[EUR][1000 genomes]
rs13439011	1.00[AMR][1000 genomes]
rs13439012	1.00[AMR][1000 genomes]
rs28372440	1.00[AMR][1000 genomes]
rs28395411	1.00[EUR][1000 genomes]
rs28411864	1.00[EUR][1000 genomes]
rs28538579	1.00[EUR][1000 genomes]
rs28573244	1.00[EUR][1000 genomes]
rs28620649	1.00[EUR][1000 genomes]
rs28645447	1.00[EUR][1000 genomes]
rs28689859	1.00[AMR][1000 genomes]
rs28785859	1.00[EUR][1000 genomes]
rs59279108	1.00[EUR][1000 genomes]
rs59353178	1.00[EUR][1000 genomes]
rs60724818	1.00[EUR][1000 genomes]
rs61910718	1.00[EUR][1000 genomes]
rs7000577	1.00[EUR][1000 genomes]
rs7013875	1.00[EUR][1000 genomes]
rs73276426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276471	1.00[EUR][1000 genomes]
rs73276474	1.00[EUR][1000 genomes]
rs73276483	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73276487	1.00[EUR][1000 genomes]
rs73276494	1.00[EUR][1000 genomes]
rs73276495	1.00[EUR][1000 genomes]
rs73276497	1.00[EUR][1000 genomes]
rs73276498	1.00[EUR][1000 genomes]
rs73278508	1.00[EUR][1000 genomes]
rs73278511	1.00[EUR][1000 genomes]
rs73278524	1.00[EUR][1000 genomes]
rs7839513	1.00[EUR][1000 genomes]
rs877351	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv13359	chr8:96049101-96054739	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
2	chr8:96038000-96063800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:96038200-96054400	Weak transcription	Fetal Kidney	kidney
4	chr8:96038200-96058800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:96038200-96059200	Weak transcription	Right Ventricle	heart
6	chr8:96038200-96061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:96038200-96061200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:96038200-96061200	Weak transcription	Psoas Muscle	Psoas
9	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
11	chr8:96038400-96054000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:96038400-96054000	Weak transcription	HUVEC	blood vessel
13	chr8:96038400-96054200	Weak transcription	Fetal Heart	heart
14	chr8:96038400-96054200	Weak transcription	NH-A	brain
15	chr8:96038400-96054200	Weak transcription	NHDF-Ad	bronchial
16	chr8:96038400-96054400	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:96038400-96055000	Weak transcription	HSMMtube	muscle
18	chr8:96038400-96060600	Weak transcription	NHLF	lung
19	chr8:96038400-96061000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:96038400-96063600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:96038400-96066800	Weak transcription	Stomach Mucosa	stomach
22	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:96038600-96054400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:96038600-96054400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:96038600-96059200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:96038600-96059800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:96038600-96061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:96038600-96061200	Weak transcription	Small Intestine	intestine
29	chr8:96038800-96053000	Weak transcription	HMEC	breast
30	chr8:96038800-96058800	Weak transcription	Fetal Brain Male	brain
31	chr8:96039200-96055200	Weak transcription	Esophagus	oesophagus
32	chr8:96039200-96061000	Weak transcription	Pancreas	Pancrea
33	chr8:96041600-96054400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:96042800-96072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:96043600-96063600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr8:96044200-96059800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr8:96044200-96060600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr8:96044200-96062600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:96044200-96071800	Strong transcription	Dnd41	blood
40	chr8:96044400-96054800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:96044400-96063200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr8:96044400-96066600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr8:96044400-96066800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:96044600-96065200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr8:96044800-96054400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:96044800-96066600	Strong transcription	Fetal Thymus	thymus
47	chr8:96045000-96068800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:96045200-96052800	Weak transcription	HSMM	muscle
49	chr8:96045200-96060400	Weak transcription	Brain Substantia Nigra	brain
50	chr8:96045400-96054800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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