Variant report

Variant	rs28372440
Chromosome Location	chr8:96010752-96010753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95955999..95958092-chr8:96009407..96011189,2	MCF-7	breast:
2	chr8:96003596..96006283-chr8:96009467..96011919,2	MCF-7	breast:
3	chr8:96005165..96007077-chr8:96009833..96012544,2	K562	blood:
4	chr8:96010656..96013460-chr8:96013847..96015745,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087047	1.00[AMR][1000 genomes]
rs10090286	1.00[AMR][1000 genomes]
rs10093849	0.87[AFR][1000 genomes]
rs10096991	1.00[AMR][1000 genomes]
rs10097190	1.00[AMR][1000 genomes]
rs10107910	1.00[AMR][1000 genomes]
rs13439011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439012	1.00[AMR][1000 genomes]
rs28370425	0.87[AFR][1000 genomes]
rs28514338	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28669688	1.00[AFR][1000 genomes]
rs28689859	1.00[AMR][1000 genomes]
rs58297413	1.00[AMR][1000 genomes]
rs73276426	1.00[AMR][1000 genomes]
rs73276462	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv524876	chr8:96000919-96027306	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95977400-96024200	Weak transcription	Aorta	Aorta
2	chr8:95987000-96019600	Weak transcription	Lung	lung
3	chr8:95987200-96018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:95997400-96018000	Weak transcription	HSMMtube	muscle
5	chr8:96001000-96012000	Weak transcription	Primary B cells from cord blood	blood
6	chr8:96001200-96013600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:96001200-96023400	Weak transcription	Liver	Liver
8	chr8:96003200-96032600	Weak transcription	Gastric	stomach
9	chr8:96004200-96013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:96004600-96013000	Weak transcription	Left Ventricle	heart
11	chr8:96008800-96011200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:96008800-96011600	Enhancers	Fetal Thymus	thymus
13	chr8:96009000-96011200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:96009000-96011200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:96009000-96012800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:96009000-96036400	Weak transcription	Spleen	Spleen
17	chr8:96009200-96011000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:96009200-96011000	Enhancers	Primary T cells from cord blood	blood
19	chr8:96009200-96011000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:96009200-96011000	Enhancers	Thymus	Thymus
21	chr8:96009400-96011000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr8:96009400-96011200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:96009400-96011200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:96009600-96010800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:96009600-96011000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:96009600-96011000	Enhancers	Fetal Lung	lung
27	chr8:96009600-96016200	Weak transcription	Pancreas	Pancrea
28	chr8:96009800-96023000	Weak transcription	Adipose Nuclei	Adipose
29	chr8:96010000-96013600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:96010200-96011200	Enhancers	Brain Germinal Matrix	brain
31	chr8:96010400-96010800	Enhancers	Fetal Brain Male	brain
32	chr8:96010400-96015400	Weak transcription	Fetal Heart	heart
33	chr8:96010600-96011200	Flanking Active TSS	Dnd41	blood

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