Variant report

Variant	rs10109032
Chromosome Location	chr8:87361396-87361397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87160636..87162188-chr8:87360256..87362719,2	MCF-7	breast:
2	chr8:87135891..87139399-chr8:87360674..87363160,4	MCF-7	breast:
3	chr8:87211551..87214169-chr8:87359598..87362232,2	MCF-7	breast:
4	chr8:87335227..87336845-chr8:87359818..87361577,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10089317	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10093867	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10097546	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10100698	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10106855	0.85[ASN][1000 genomes]
rs10113158	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504823	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10956820	0.85[ASN][1000 genomes]
rs10956822	0.85[ASN][1000 genomes]
rs11781993	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12156004	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12216783	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12335013	0.91[ASN][1000 genomes]
rs13265266	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17681534	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28384362	0.85[ASN][1000 genomes]
rs28433311	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28445847	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28504479	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28715255	0.91[ASN][1000 genomes]
rs28783474	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2917553	0.85[ASN][1000 genomes]
rs2953507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2953508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2953512	0.85[ASN][1000 genomes]
rs2953514	0.85[ASN][1000 genomes]
rs2953515	0.85[ASN][1000 genomes]
rs2953518	0.85[ASN][1000 genomes]
rs2953519	0.85[ASN][1000 genomes]
rs2953525	0.82[EUR][1000 genomes]
rs2976170	0.85[ASN][1000 genomes]
rs2976173	0.85[ASN][1000 genomes]
rs2976174	0.85[ASN][1000 genomes]
rs2976175	0.85[ASN][1000 genomes]
rs2976176	0.85[ASN][1000 genomes]
rs2976180	0.85[ASN][1000 genomes]
rs2976194	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2976202	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4370511	0.85[ASN][1000 genomes]
rs55671538	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55871514	0.91[ASN][1000 genomes]
rs6471284	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471295	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471317	0.91[ASN][1000 genomes]
rs6993497	0.85[ASN][1000 genomes]
rs6993612	0.91[ASN][1000 genomes]
rs7015772	0.91[ASN][1000 genomes]
rs73262925	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73262927	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73688817	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73688823	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73688824	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73688827	0.91[ASN][1000 genomes]
rs7815489	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7837581	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7837618	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7839096	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843272	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843399	0.85[ASN][1000 genomes]
rs7846468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9656823	0.85[ASN][1000 genomes]
rs9656824	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10109032	FAM82B///LOC642197	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87355800-87363600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:87355800-87363800	Weak transcription	Esophagus	oesophagus
3	chr8:87355800-87405600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:87356800-87403800	Weak transcription	Aorta	Aorta
5	chr8:87357000-87362800	Weak transcription	Fetal Kidney	kidney
6	chr8:87357000-87366400	Weak transcription	Fetal Lung	lung
7	chr8:87357000-87375600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:87357200-87365000	Weak transcription	Brain Substantia Nigra	brain
9	chr8:87357200-87366000	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:87357200-87368800	Weak transcription	Primary B cells from cord blood	blood
11	chr8:87357200-87369600	Weak transcription	HSMM	muscle
12	chr8:87357400-87361600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:87357400-87361800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:87357400-87362200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr8:87357400-87362800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:87357400-87363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:87357400-87363000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:87357400-87364400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr8:87357400-87364600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:87357400-87364600	Weak transcription	Lung	lung
21	chr8:87357400-87367200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:87357400-87368000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:87357400-87372600	Weak transcription	Fetal Intestine Small	intestine
24	chr8:87357400-87403400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:87357600-87361600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:87357600-87361600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:87357600-87361800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:87357600-87361800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:87357600-87361800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr8:87357600-87361800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:87357600-87361800	Weak transcription	Right Atrium	heart
32	chr8:87357600-87361800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:87357600-87362000	Weak transcription	Right Ventricle	heart
34	chr8:87357600-87362600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr8:87357600-87364200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr8:87357600-87364800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr8:87357600-87364800	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:87357600-87364800	Weak transcription	K562	blood
39	chr8:87357600-87366000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:87357600-87368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:87357600-87368800	Weak transcription	Brain Angular Gyrus	brain
42	chr8:87357600-87374600	Weak transcription	HUVEC	blood vessel
43	chr8:87357600-87382200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:87357800-87361800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:87357800-87362200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:87357800-87362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:87357800-87367400	Weak transcription	Fetal Intestine Large	intestine
48	chr8:87357800-87368600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr8:87357800-87381000	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr8:87357800-87382000	Weak transcription	Placenta	Placenta

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