Variant report

Variant	rs10100698
Chromosome Location	chr8:87356729-87356730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:87356472-87356763	Hela-S3	cervix:	n/a	n/a
2	SIN3AK20	chr8:87356100-87357559	MCF-7	breast:	n/a	n/a
3	TEAD4	chr8:87356409-87356843	K562	blood:	n/a	n/a
4	JUND	chr8:87356396-87356779	K562	blood:	n/a	chr8:87356425-87356437
5	ARID3A	chr8:87356451-87356776	K562	blood:	n/a	n/a
6	EP300	chr8:87356129-87356801	K562	blood:	n/a	n/a
7	FOXA1	chr8:87356365-87356902	HepG2	liver:	n/a	n/a
8	POLR2A	chr8:87356176-87356921	MCF10A-Er-Src	breast:	n/a	n/a
9	EP300	chr8:87356407-87356817	HepG2	liver:	n/a	n/a
10	FOXA1	chr8:87356331-87356874	HepG2	liver:	n/a	n/a
11	TCF7L2	chr8:87356324-87356876	HepG2	liver:	n/a	chr8:87356844-87356853 chr8:87356599-87356613
12	NFIC	chr8:87356185-87357041	HepG2	liver:	n/a	n/a
13	GATA3	chr8:87356428-87356936	A549	lung:	n/a	chr8:87356469-87356485
14	GATA3	chr8:87356400-87356853	MCF-7	breast:	n/a	chr8:87356469-87356485
15	FOXA1	chr8:87356439-87356758	HepG2	liver:	n/a	n/a
16	GATA3	chr8:87356303-87357050	T-47D	breast:	n/a	chr8:87356469-87356485
17	FOXA1	chr8:87356361-87356848	T-47D	breast:	n/a	n/a
18	FOXA1	chr8:87356455-87356844	HepG2	liver:	n/a	n/a
19	MYBL2	chr8:87356358-87356822	HepG2	liver:	n/a	n/a
20	E2F4	chr8:87356264-87356861	MCF10A-Er-Src	breast:	n/a	n/a
21	GATA2	chr8:87356437-87356783	SH-SY5Y	brain:	n/a	chr8:87356469-87356485
22	GATA3	chr8:87356410-87356835	MCF-7	breast:	n/a	chr8:87356469-87356485
23	GATA3	chr8:87356375-87356836	SH-SY5Y	brain:	n/a	chr8:87356469-87356485
24	MAFK	chr8:87356400-87356906	K562	blood:	n/a	n/a
25	GATA3	chr8:87356253-87356983	A549	lung:	n/a	chr8:87356469-87356485
26	TCF7L2	chr8:87355747-87356982	HEK293	kidney:	n/a	chr8:87356844-87356853 chr8:87355762-87355771 chr8:87355759-87355773 chr8:87356599-87356613
27	ESR1	chr8:87356347-87356803	T-47D	breast:	n/a	n/a
28	GATA3	chr8:87356349-87356876	T-47D	breast:	n/a	chr8:87356469-87356485
29	IRF1	chr8:87356263-87356755	K562	blood:	n/a	chr8:87356389-87356402 chr8:87356504-87356518 chr8:87356390-87356404
30	TCF7L2	chr8:87356306-87356983	MCF-7	breast:	n/a	chr8:87356844-87356853 chr8:87356599-87356613
31	MYBL2	chr8:87356334-87357045	HepG2	liver:	n/a	n/a
32	HEY1	chr8:87356310-87357253	HepG2	liver:	n/a	n/a
33	GATA2	chr8:87356271-87356874	HUVEC	blood vessel:	n/a	chr8:87356469-87356485
34	TCF7L2	chr8:87356405-87356925	Hela-S3	cervix:	n/a	chr8:87356844-87356853 chr8:87356599-87356613
35	POLR2A	chr8:87356236-87357479	HepG2	liver:	n/a	n/a
36	ARID3A	chr8:87356369-87357348	HepG2	liver:	n/a	n/a
37	FOXA1	chr8:87356485-87356730	T-47D	breast:	n/a	n/a
38	TCF12	chr8:87356368-87356922	A549	lung:	n/a	n/a
39	TEAD4	chr8:87356350-87356925	HepG2	liver:	n/a	n/a
40	SP1	chr8:87356473-87356784	HepG2	liver:	n/a	n/a
41	HDAC2	chr8:87356271-87356897	MCF-7	breast:	n/a	chr8:87356651-87356665
42	ELF1	chr8:87356402-87356987	MCF-7	breast:	n/a	n/a
43	EP300	chr8:87356367-87356896	HepG2	liver:	n/a	n/a
44	NR2F2	chr8:87356290-87356911	MCF-7	breast:	n/a	n/a
45	GATA3	chr8:87356175-87357140	MCF-7	breast:	n/a	chr8:87356469-87356485
46	ZNF217	chr8:87356455-87356778	MCF-7	breast:	n/a	n/a
47	TCF7L2	chr8:87356411-87356888	PANC-1	pancreas:	n/a	chr8:87356844-87356853 chr8:87356599-87356613
48	POLR2A	chr8:87356562-87356958	MCF-7	breast:	n/a	n/a
49	MBD4	chr8:87356132-87356862	HepG2	liver:	n/a	n/a
50	ELF1	chr8:87356481-87356749	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:87329069..87335338-chr8:87352769..87359177,10	MCF-7	breast:
2	chr8:87127285..87128795-chr8:87356726..87359670,2	MCF-7	breast:
3	chr8:87353718..87358209-chr8:87386085..87389077,4	MCF-7	breast:
4	chr8:87165113..87167523-chr8:87354412..87356761,2	MCF-7	breast:
5	chr8:87355027..87357482-chr8:87519258..87521837,2	K562	blood:

Variant related genes	Relation type
ENSG00000254231	TF binding region
ENSG00000253675	Chromatin interaction
ENSG00000164893	Chromatin interaction
ENSG00000123124	Chromatin interaction
ENSG00000176623	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10086188	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10089169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10089253	0.89[EUR][1000 genomes]
rs10089317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090898	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10092168	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10093867	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10095589	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10097546	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10097866	0.89[EUR][1000 genomes]
rs10098365	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10100368	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10106390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10106855	1.00[ASN][1000 genomes]
rs10107117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10107571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10108586	0.89[EUR][1000 genomes]
rs10109032	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10109677	0.92[EUR][1000 genomes]
rs10110323	0.84[EUR][1000 genomes]
rs10113158	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956821	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956871	1.00[CHB][hapmap]
rs11774253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11774499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11776698	0.89[EUR][1000 genomes]
rs11781993	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11783382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11984519	0.84[EUR][1000 genomes]
rs11986423	0.82[EUR][1000 genomes]
rs11994508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs11997927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12155979	0.94[EUR][1000 genomes]
rs12155981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[EUR][1000 genomes]
rs12156004	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216783	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12335013	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677915	0.83[CEU][hapmap]
rs13265266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1595207	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs16915375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17681534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17681826	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2118070	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs28384362	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28397606	0.84[EUR][1000 genomes]
rs28416254	0.84[EUR][1000 genomes]
rs28433311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28438974	0.84[EUR][1000 genomes]
rs28445847	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28504479	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28613262	0.81[EUR][1000 genomes]
rs28680173	0.87[EUR][1000 genomes]
rs28687116	0.82[EUR][1000 genomes]
rs28715255	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28783474	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2917553	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2917559	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2917561	0.84[EUR][1000 genomes]
rs2953507	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2953508	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2953512	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953514	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953515	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953519	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953520	0.89[EUR][1000 genomes]
rs2953521	0.93[EUR][1000 genomes]
rs2953523	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2953524	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2953526	0.84[EUR][1000 genomes]
rs2954348	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2976170	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976173	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976174	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976175	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976176	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976180	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976192	0.90[ASN][1000 genomes]
rs2976194	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2976195	0.93[ASN][1000 genomes]
rs2976196	0.93[ASN][1000 genomes]
rs2976199	0.93[ASN][1000 genomes]
rs2976202	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3087641	0.84[EUR][1000 genomes]
rs4370511	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs4628240	0.84[EUR][1000 genomes]
rs4633041	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs55671538	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55871514	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57638937	0.84[EUR][1000 genomes]
rs58837061	0.89[EUR][1000 genomes]
rs6471266	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6471284	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471295	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471317	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6980476	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6993497	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6993612	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7015772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7018083	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs73262925	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73262927	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73688817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73688823	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73688824	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73688827	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73688856	0.83[EUR][1000 genomes]
rs73688857	0.83[EUR][1000 genomes]
rs73688858	0.84[EUR][1000 genomes]
rs73688859	0.84[EUR][1000 genomes]
rs73688862	0.84[EUR][1000 genomes]
rs7815489	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7818436	0.84[EUR][1000 genomes]
rs7824873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7837581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7837618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7839096	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7843272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7843399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7844014	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7846468	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297913	0.84[EUR][1000 genomes]
rs9650129	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9656823	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656824	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017535	chr8:87261702-87367934	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3441725	chr8:87342885-87359895	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10100698	FAM82B	Cis_1M	lymphoblastoid	RTeQTL
rs10100698	FAM82B///LOC642197	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87353600-87357400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:87353800-87356800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr8:87353800-87357400	Active TSS	Stomach Smooth Muscle	stomach
4	chr8:87354000-87356800	Active TSS	Colon Smooth Muscle	Colon
5	chr8:87354000-87356800	Active TSS	Fetal Brain Male	brain
6	chr8:87354000-87356800	Active TSS	Ovary	ovary
7	chr8:87354000-87357000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:87354000-87357000	Active TSS	GM12878-XiMat	blood
9	chr8:87354000-87357000	Active TSS	NHLF	lung
10	chr8:87354000-87357200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr8:87354000-87357400	Active TSS	Fetal Intestine Large	intestine
12	chr8:87354000-87357600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:87354000-87357600	Active TSS	Right Atrium	heart
14	chr8:87354000-87358200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:87354200-87356800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr8:87354200-87356800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:87354200-87356800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:87354200-87356800	Active TSS	Aorta	Aorta
19	chr8:87354200-87356800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr8:87354200-87356800	Active TSS	Fetal Lung	lung
21	chr8:87354200-87356800	Active TSS	Thymus	Thymus
22	chr8:87354200-87357000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:87354200-87357000	Active TSS	NH-A	brain
24	chr8:87354200-87357200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:87354200-87357200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr8:87354200-87357200	Active TSS	Fetal Stomach	stomach
27	chr8:87354200-87357200	Active TSS	Left Ventricle	heart
28	chr8:87354200-87357400	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr8:87354200-87357400	Active TSS	Liver	Liver
30	chr8:87354200-87357400	Active TSS	Right Ventricle	heart
31	chr8:87354200-87357600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr8:87354200-87357600	Active TSS	Fetal Muscle Leg	muscle
33	chr8:87354400-87356800	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr8:87354400-87356800	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr8:87354400-87356800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr8:87354400-87356800	Active TSS	Brain Angular Gyrus	brain
37	chr8:87354400-87356800	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr8:87354400-87356800	Active TSS	Stomach Mucosa	stomach
39	chr8:87354400-87356800	Active TSS	NHEK	skin
40	chr8:87354400-87357000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr8:87354400-87357000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:87354400-87357000	Active TSS	Fetal Thymus	thymus
43	chr8:87354400-87357000	Active TSS	Psoas Muscle	Psoas
44	chr8:87354400-87357000	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr8:87354400-87357000	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr8:87354400-87357000	Active TSS	Hela-S3	cervix
47	chr8:87354400-87357200	Active TSS	H1 Cell Line	embryonic stem cell
48	chr8:87354400-87357200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:87354400-87357200	Active TSS	Placenta	Placenta
50	chr8:87354400-87357400	Active TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links