Variant report

Variant	rs10092168
Chromosome Location	chr8:87442135-87442136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87440126..87442804-chr8:87449363..87451230,2	K562	blood:
2	chr8:87440656..87442407-chr8:87447766..87450661,2	MCF-7	breast:
3	chr8:87427807..87429419-chr8:87440053..87442565,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10086188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10089169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10089253	0.93[ASN][1000 genomes]
rs10090898	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10095589	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10097866	0.93[ASN][1000 genomes]
rs10098365	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10100182	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10100254	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10100368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10100698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10106390	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10106855	0.87[EUR][1000 genomes]
rs10107117	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10107571	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10108586	0.93[ASN][1000 genomes]
rs10110096	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10481195	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10956822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10956871	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11774253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11774499	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11776698	0.93[ASN][1000 genomes]
rs11783382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11984519	0.87[ASN][1000 genomes]
rs11994508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11997927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11998558	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12155979	1.00[ASN][1000 genomes]
rs12155981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16915375	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915389	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17681534	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17681826	0.82[JPT][hapmap]
rs28384362	0.81[ASN][1000 genomes]
rs28397606	0.87[ASN][1000 genomes]
rs28416254	0.87[ASN][1000 genomes]
rs28680173	0.97[ASN][1000 genomes]
rs2953512	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2953514	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2953515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2953518	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2954348	1.00[JPT][hapmap]
rs2976176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2976180	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3087641	0.87[ASN][1000 genomes]
rs4440616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58837061	0.93[ASN][1000 genomes]
rs67332431	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6980476	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6992624	0.87[ASN][1000 genomes]
rs6993497	0.81[ASN][1000 genomes]
rs7015772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7018083	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72690416	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73688856	0.81[ASN][1000 genomes]
rs73688857	0.84[ASN][1000 genomes]
rs73688858	0.84[ASN][1000 genomes]
rs73688862	0.84[ASN][1000 genomes]
rs7818436	0.87[ASN][1000 genomes]
rs7823951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7824873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7843399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7844014	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9297913	0.87[ASN][1000 genomes]
rs9650129	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv3428747	chr8:87442061-87444609	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10092168	FAM82B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:87405400-87443600	Weak transcription	NHLF	lung
4	chr8:87416400-87443600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr8:87426000-87446400	Weak transcription	K562	blood
6	chr8:87427400-87452600	Weak transcription	HSMMtube	muscle
7	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:87428200-87443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:87428600-87460800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:87429400-87443600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:87429400-87443600	Weak transcription	Small Intestine	intestine
12	chr8:87429400-87443800	Weak transcription	Brain Angular Gyrus	brain
13	chr8:87429400-87453600	Weak transcription	Stomach Mucosa	stomach
14	chr8:87429800-87443800	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:87429800-87444000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:87431600-87443800	Weak transcription	Colonic Mucosa	Colon
17	chr8:87431800-87443600	Weak transcription	GM12878-XiMat	blood
18	chr8:87432400-87443800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:87432600-87451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:87432800-87443800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:87436400-87443600	Weak transcription	Fetal Brain Female	brain
22	chr8:87436400-87451800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:87436800-87442400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:87436800-87451600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr8:87437200-87445600	Strong transcription	Fetal Intestine Large	intestine
27	chr8:87437200-87450400	Strong transcription	Dnd41	blood
28	chr8:87437400-87442200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:87437400-87442200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:87437400-87442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:87437400-87442400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr8:87437400-87442400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr8:87437400-87442600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:87437400-87451400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr8:87437400-87451600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:87437400-87451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:87437400-87451800	Strong transcription	Fetal Lung	lung
38	chr8:87437400-87452200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:87437400-87452600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:87437400-87453000	Strong transcription	Liver	Liver
41	chr8:87437400-87456400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:87437400-87457800	Strong transcription	Fetal Thymus	thymus
43	chr8:87437400-87458000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:87437400-87458000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:87437400-87458200	Strong transcription	Placenta	Placenta
46	chr8:87437400-87482800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:87437600-87448800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:87437600-87451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:87437600-87452000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr8:87437800-87489600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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