Variant report

Variant	rs10098365
Chromosome Location	chr8:87526823-87526824
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:219)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:219 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:87526340-87527110	SK-N-SH	brain:	n/a	n/a
2	MYC	chr8:87526396-87527211	K562	blood:	n/a	n/a
3	POLR2A	chr8:87526450-87527023	A549	lung:	n/a	n/a
4	POLR2A	chr8:87526636-87526876	HepG2	liver:	n/a	n/a
5	POLR2A	chr8:87526631-87526918	U87	brain:	n/a	n/a
6	IRF1	chr8:87526389-87527575	K562	blood:	n/a	n/a
7	POLR2A	chr8:87526362-87527060	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr8:87526302-87527344	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr8:87526633-87527015	H1-hESC	embryonic stem cell:	n/a	n/a
10	MXI1	chr8:87526406-87527361	HepG2	liver:	n/a	n/a
11	POLR2A	chr8:87526472-87527039	Gliobla	brain:	n/a	n/a
12	MAX	chr8:87526084-87527565	MCF-7	breast:	n/a	n/a
13	RCOR1	chr8:87526541-87526881	HepG2	liver:	n/a	n/a
14	POLR2A	chr8:87526322-87527382	Hela-S3	cervix:	n/a	n/a
15	SIN3AK20	chr8:87526615-87527255	PANC-1	pancreas:	n/a	n/a
16	BACH1	chr8:87526772-87526879	H1-hESC	embryonic stem cell:	n/a	n/a
17	MYC	chr8:87526673-87526889	MCF-7	breast:	n/a	n/a
18	USF1	chr8:87526658-87526982	ECC-1	luminal epithelium:	n/a	chr8:87526895-87526911 chr8:87526892-87526908
19	MAX	chr8:87526249-87527369	ECC-1	luminal epithelium:	n/a	n/a
20	MXI1	chr8:87526395-87527137	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr8:87526633-87526877	K562	blood:	n/a	n/a
22	CREB1	chr8:87526504-87526915	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr8:87526397-87526949	HepG2	liver:	n/a	n/a
24	FOXP2	chr8:87526642-87526995	SK-N-MC	brain:	n/a	n/a
25	BHLHE40	chr8:87526375-87527109	K562	blood:	n/a	chr8:87526895-87526911 chr8:87526892-87526908
26	HCFC1	chr8:87526392-87527091	K562	blood:	n/a	n/a
27	RCOR1	chr8:87526433-87527350	K562	blood:	n/a	n/a
28	POLR2A	chr8:87526614-87527045	A549	lung:	n/a	n/a
29	POLR2A	chr8:87526284-87527175	K562	blood:	n/a	n/a
30	POLR2A	chr8:87526350-87527309	GM18951	blood:	n/a	n/a
31	ATF2	chr8:87526638-87527155	GM12878	blood:	n/a	n/a
32	POLR2A	chr8:87526334-87526915	K562	blood:	n/a	n/a
33	MYC	chr8:87526510-87527015	MCF-7	breast:	n/a	n/a
34	POLR2A	chr8:87526340-87527022	ECC-1	luminal epithelium:	n/a	n/a
35	WRNIP1	chr8:87526246-87526878	GM12878	blood:	n/a	n/a
36	POLR2A	chr8:87526393-87526972	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr8:87526526-87526918	IMR90	lung:	n/a	n/a
38	RFX5	chr8:87526411-87527244	Hela-S3	cervix:	n/a	chr8:87526786-87526801 chr8:87526813-87526822 chr8:87526810-87526825
39	HDAC2	chr8:87526313-87527004	MCF-7	breast:	n/a	n/a
40	SP1	chr8:87526374-87527066	GM12878	blood:	n/a	n/a
41	RUNX3	chr8:87526617-87527345	GM12878	blood:	n/a	n/a
42	MYC	chr8:87526347-87527220	K562	blood:	n/a	n/a
43	POLR2A	chr8:87526416-87527084	HUVEC	blood vessel:	n/a	n/a
44	POLR2A	chr8:87526331-87527200	Raji	blood:	n/a	n/a
45	POLR2A	chr8:87526360-87527241	PFSK-1	brain:	n/a	n/a
46	POLR2A	chr8:87526481-87526923	GM12878	blood:	n/a	n/a
47	UBTF	chr8:87526497-87527291	K562	blood:	n/a	n/a
48	PML	chr8:87526305-87527230	MCF-7	breast:	n/a	n/a
49	TAF1	chr8:87526386-87527136	ECC-1	luminal epithelium:	n/a	n/a
50	POLR2A	chr8:87526638-87526863	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:87519046..87522405-chr8:87523698..87528376,9	K562	blood:
2	chr7:27170045..27170565-chr8:87526350..87526968,3	MCF-7	breast:
3	chr8:87524372..87527585-chr8:99056393..99058902,3	MCF-7	breast:
4	chr19:55918638..55919439-chr8:87526309..87526952,2	HCT-116	colon:
5	chr11:62621914..62624685-chr8:87526558..87528139,2	MCF-7	breast:
6	chr8:87518953..87524236-chr8:87524519..87528376,7	K562	blood:

No data

Variant related genes	Relation type
RMDN1	TF binding region
ENSG00000168003	Chromatin interaction
ENSG00000197576	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000156482	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000176623	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10086188	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089169	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10089253	0.84[ASN][1000 genomes]
rs10090898	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10090963	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092168	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10094332	1.00[ASN][1000 genomes]
rs10095589	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097866	0.84[ASN][1000 genomes]
rs10100182	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100247	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100368	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100698	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10106390	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107117	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107571	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108586	0.84[ASN][1000 genomes]
rs10110096	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10481195	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10956820	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10956822	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10956871	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774253	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11774499	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776698	0.84[ASN][1000 genomes]
rs11783382	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11984519	0.90[ASN][1000 genomes]
rs11986423	1.00[ASN][1000 genomes]
rs11994508	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11997927	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11998558	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12155981	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16915375	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915389	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681534	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28397606	0.90[ASN][1000 genomes]
rs28416254	0.90[ASN][1000 genomes]
rs28438974	1.00[ASN][1000 genomes]
rs28514445	1.00[ASN][1000 genomes]
rs28540009	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613262	1.00[ASN][1000 genomes]
rs28687116	1.00[ASN][1000 genomes]
rs2953512	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2953514	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2953515	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2953518	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2976176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2976180	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3087641	0.90[ASN][1000 genomes]
rs4440616	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs57638937	0.82[ASN][1000 genomes]
rs58837061	0.84[ASN][1000 genomes]
rs6651177	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651268	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67332431	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6980476	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992624	0.90[ASN][1000 genomes]
rs7015772	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7018083	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72690416	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72690443	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690445	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690447	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690455	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690457	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690474	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688856	0.84[ASN][1000 genomes]
rs73688857	0.88[ASN][1000 genomes]
rs73688858	0.88[ASN][1000 genomes]
rs73688859	0.81[ASN][1000 genomes]
rs73688862	0.88[ASN][1000 genomes]
rs7818436	0.90[ASN][1000 genomes]
rs7823951	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7824873	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7833201	0.97[ASN][1000 genomes]
rs7843399	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7844014	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297913	0.90[ASN][1000 genomes]
rs9650128	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650129	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10098365	FAM82B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87526000-87527000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:87526000-87527200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:87526200-87527400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr8:87526200-87527400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:87526200-87527400	Active TSS	Fetal Brain Female	brain
6	chr8:87526200-87527400	Active TSS	Rectal Smooth Muscle	rectum
7	chr8:87526200-87527600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr8:87526200-87527600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:87526200-87527600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr8:87526200-87528000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:87526200-87528000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:87526400-87527000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:87526400-87527000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:87526400-87527000	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr8:87526400-87527000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr8:87526400-87527000	Active TSS	Stomach Smooth Muscle	stomach
17	chr8:87526400-87527200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:87526400-87527200	Active TSS	Primary T cells from cord blood	blood
19	chr8:87526400-87527200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:87526400-87527200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr8:87526400-87527200	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr8:87526400-87527200	Active TSS	GM12878-XiMat	blood
23	chr8:87526400-87527200	Active TSS	HepG2	liver
24	chr8:87526400-87527400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:87526400-87527400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:87526400-87527400	Active TSS	Brain Angular Gyrus	brain
27	chr8:87526400-87527400	Active TSS	Brain Anterior Caudate	brain
28	chr8:87526400-87527400	Active TSS	Brain Cingulate Gyrus	brain
29	chr8:87526400-87527400	Active TSS	Brain Hippocampus Middle	brain
30	chr8:87526400-87527400	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr8:87526400-87527400	Active TSS	Colon Smooth Muscle	Colon
32	chr8:87526400-87527400	Active TSS	Fetal Stomach	stomach
33	chr8:87526400-87527400	Active TSS	A549	lung
34	chr8:87526400-87527600	Active TSS	Aorta	Aorta
35	chr8:87526400-87527600	Active TSS	Hela-S3	cervix
36	chr8:87526400-87527800	Active TSS	Ovary	ovary
37	chr8:87526600-87527000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:87526600-87527000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:87526600-87527000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:87526600-87527000	Active TSS	Primary monocytes fromperipheralblood	blood
41	chr8:87526600-87527000	Active TSS	Primary B cells from peripheral blood	blood
42	chr8:87526600-87527000	Active TSS	Primary T cells fromperipheralblood	blood
43	chr8:87526600-87527000	Active TSS	Primary hematopoietic stem cells	blood
44	chr8:87526600-87527000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:87526600-87527000	Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr8:87526600-87527000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:87526600-87527000	Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr8:87526600-87527000	Active TSS	Liver	Liver
49	chr8:87526600-87527000	Active TSS	Colonic Mucosa	Colon
50	chr8:87526600-87527000	Active TSS	Placenta	Placenta

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