Variant report

Variant	rs6651268
Chromosome Location	chr8:87535869-87535870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87533423..87536976-chr8:87537024..87544285,8	MCF-7	breast:
2	chr8:87534644..87537831-chr8:87539557..87542528,4	MCF-7	breast:
3	chr8:87519039..87522642-chr8:87534876..87539085,4	K562	blood:
4	chr8:87535223..87537919-chr8:87575913..87578661,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176623	Chromatin interaction
ENSG00000085719	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10086188	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089169	0.88[ASN][1000 genomes]
rs10089253	0.84[ASN][1000 genomes]
rs10090898	0.85[ASN][1000 genomes]
rs10090963	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094332	1.00[ASN][1000 genomes]
rs10095589	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097866	0.84[ASN][1000 genomes]
rs10098365	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100182	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100247	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100254	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100368	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10106390	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107117	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107571	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108586	0.84[ASN][1000 genomes]
rs10110096	0.90[ASN][1000 genomes]
rs10481195	0.84[ASN][1000 genomes]
rs10956871	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774253	0.85[ASN][1000 genomes]
rs11774499	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776698	0.84[ASN][1000 genomes]
rs11783382	0.90[ASN][1000 genomes]
rs11984519	0.90[ASN][1000 genomes]
rs11986423	1.00[ASN][1000 genomes]
rs11994508	0.88[ASN][1000 genomes]
rs11997927	0.90[ASN][1000 genomes]
rs11998558	0.84[ASN][1000 genomes]
rs16915375	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915389	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397606	0.90[ASN][1000 genomes]
rs28416254	0.90[ASN][1000 genomes]
rs28438974	1.00[ASN][1000 genomes]
rs28514445	1.00[ASN][1000 genomes]
rs28540009	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613262	1.00[ASN][1000 genomes]
rs28687116	1.00[ASN][1000 genomes]
rs3087641	0.90[ASN][1000 genomes]
rs57638937	0.82[ASN][1000 genomes]
rs58837061	0.84[ASN][1000 genomes]
rs6651177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67332431	0.90[ASN][1000 genomes]
rs6980476	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992624	0.90[ASN][1000 genomes]
rs7018083	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72690416	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72690443	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690445	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690447	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690455	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690457	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72690474	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688856	0.84[ASN][1000 genomes]
rs73688857	0.88[ASN][1000 genomes]
rs73688858	0.88[ASN][1000 genomes]
rs73688859	0.81[ASN][1000 genomes]
rs73688862	0.88[ASN][1000 genomes]
rs7818436	0.90[ASN][1000 genomes]
rs7823951	0.97[ASN][1000 genomes]
rs7824873	1.00[ASN][1000 genomes]
rs7833201	0.97[ASN][1000 genomes]
rs7844014	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297913	0.90[ASN][1000 genomes]
rs9650128	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650129	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6651268	FAM82B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87527400-87568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87527600-87539400	Weak transcription	Lung	lung
3	chr8:87527600-87542400	Weak transcription	Esophagus	oesophagus
4	chr8:87527600-87550200	Weak transcription	Aorta	Aorta
5	chr8:87527600-87562000	Weak transcription	Pancreas	Pancrea
6	chr8:87527600-87568200	Weak transcription	Gastric	stomach
7	chr8:87527600-87584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:87527800-87541600	Weak transcription	Ovary	ovary
9	chr8:87527800-87542600	Weak transcription	A549	lung
10	chr8:87527800-87543400	Weak transcription	K562	blood
11	chr8:87527800-87546200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:87527800-87546200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:87527800-87547400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:87527800-87560000	Weak transcription	HSMMtube	muscle
15	chr8:87528000-87539200	Weak transcription	Brain Germinal Matrix	brain
16	chr8:87528000-87541600	Weak transcription	Fetal Brain Female	brain
17	chr8:87528000-87543200	Weak transcription	Fetal Kidney	kidney
18	chr8:87528000-87543200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:87528000-87550800	Weak transcription	Psoas Muscle	Psoas
20	chr8:87528000-87551400	Weak transcription	Right Ventricle	heart
21	chr8:87528000-87563800	Weak transcription	Hela-S3	cervix
22	chr8:87528000-87573600	Weak transcription	Stomach Mucosa	stomach
23	chr8:87528200-87537000	Weak transcription	Fetal Stomach	stomach
24	chr8:87528200-87537200	Weak transcription	Fetal Thymus	thymus
25	chr8:87528200-87539400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:87528200-87541400	Weak transcription	Adipose Nuclei	Adipose
27	chr8:87528200-87541600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr8:87528200-87543200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:87528200-87543400	Weak transcription	Brain Angular Gyrus	brain
30	chr8:87528200-87543400	Weak transcription	Brain Anterior Caudate	brain
31	chr8:87528200-87543400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:87528200-87543400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:87528200-87544200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr8:87528200-87572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:87528400-87541000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr8:87528400-87541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:87528400-87541600	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:87528400-87543400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:87528400-87543400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:87528400-87543400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr8:87528400-87550400	Weak transcription	HepG2	liver
42	chr8:87528400-87560400	Weak transcription	Thymus	Thymus
43	chr8:87528600-87539400	Weak transcription	Left Ventricle	heart
44	chr8:87528600-87543400	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:87528600-87543600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:87528600-87548600	Weak transcription	Fetal Brain Male	brain
47	chr8:87528600-87557200	Weak transcription	Small Intestine	intestine
48	chr8:87528600-87566000	Weak transcription	Spleen	Spleen
49	chr8:87529000-87543600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:87529400-87549000	Weak transcription	Brain Substantia Nigra	brain

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