Variant report

Variant	rs10109062
Chromosome Location	chr8:118859726-118859727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118855769..118857808-chr8:118858590..118860796,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10088632	1.00[CEU][hapmap]
rs10090920	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10094440	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094527	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10098149	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs10098896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10098992	0.89[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10102199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10102974	0.89[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10103242	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10103734	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10105753	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10107623	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10109017	1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10111197	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10111573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10111748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10111990	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112120	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10113092	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11562730	1.00[CEU][hapmap]
rs11562766	1.00[CEU][hapmap]
rs12675718	0.83[JPT][hapmap]
rs17430042	0.83[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17430154	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430175	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430182	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430252	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430273	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430294	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17430301	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439791	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439798	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439812	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439840	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439847	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17439868	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17450494	0.89[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17450612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450661	0.85[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17450667	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17450681	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs17452687	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17474672	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17474679	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17474839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17475323	1.00[CEU][hapmap]
rs17475358	1.00[CEU][hapmap]
rs17475365	1.00[CEU][hapmap]
rs17475694	1.00[CEU][hapmap]
rs17475722	1.00[CEU][hapmap]
rs17475743	1.00[CEU][hapmap]
rs17475785	1.00[CEU][hapmap]
rs17475918	1.00[CEU][hapmap]
rs17476247	1.00[CEU][hapmap]
rs17479362	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17503377	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17503447	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17504170	1.00[CEU][hapmap]
rs17504205	1.00[CEU][hapmap]
rs17504743	1.00[CEU][hapmap]
rs17505079	1.00[CEU][hapmap]
rs2067866	0.89[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4377987	1.00[CEU][hapmap]
rs4556109	1.00[CEU][hapmap]
rs6984750	1.00[CEU][hapmap]
rs6987177	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7357537	1.00[CEU][hapmap]
rs73706423	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73706427	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7462118	1.00[CEU][hapmap]
rs7835395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297572	1.00[CEU][hapmap]
rs9656922	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9656924	1.00[CEU][hapmap]
rs9792392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118825200-118859800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:118825600-118860000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:118829800-118859800	Weak transcription	Esophagus	oesophagus
4	chr8:118832600-118859800	Weak transcription	Spleen	Spleen
5	chr8:118846600-118861800	Weak transcription	HUVEC	blood vessel
6	chr8:118848000-118859800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:118848400-118859800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:118849600-118865800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:118850600-118859800	Weak transcription	A549	lung
10	chr8:118853600-118860000	Weak transcription	Right Ventricle	heart
11	chr8:118853800-118861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:118855200-118859800	Weak transcription	Psoas Muscle	Psoas
13	chr8:118855800-118859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:118855800-118859800	Weak transcription	Gastric	stomach
15	chr8:118855800-118862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:118855800-118866200	Weak transcription	Liver	Liver
17	chr8:118857600-118859800	Weak transcription	Aorta	Aorta
18	chr8:118857600-118859800	Weak transcription	Fetal Intestine Large	intestine
19	chr8:118857600-118860000	Weak transcription	Fetal Lung	lung
20	chr8:118857600-118862600	Weak transcription	Stomach Mucosa	stomach
21	chr8:118857600-118865800	Weak transcription	Fetal Intestine Small	intestine
22	chr8:118857800-118859800	Weak transcription	NHLF	lung
23	chr8:118858000-118863600	Enhancers	Fetal Heart	heart
24	chr8:118858200-118862200	Weak transcription	Small Intestine	intestine
25	chr8:118858400-118859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:118858400-118861800	Enhancers	HSMMtube	muscle
27	chr8:118858400-118863400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:118858600-118863600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:118858800-118861400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:118858800-118861600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:118858800-118861600	Enhancers	Left Ventricle	heart
32	chr8:118858800-118861600	Enhancers	Pancreas	Pancrea
33	chr8:118858800-118863400	Enhancers	HSMM	muscle
34	chr8:118858800-118863800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr8:118858800-118864000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:118858800-118865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:118859000-118859800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:118859000-118860600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:118859000-118861200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:118859000-118861200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr8:118859000-118861200	Enhancers	Fetal Stomach	stomach
42	chr8:118859000-118861400	Enhancers	Right Atrium	heart
43	chr8:118859000-118864600	Enhancers	Osteobl	bone
44	chr8:118859200-118859800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr8:118859200-118861600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:118859200-118862400	Enhancers	NHDF-Ad	bronchial
47	chr8:118859200-118862600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:118859200-118863400	Enhancers	NH-A	brain
49	chr8:118859400-118859800	Enhancers	Stomach Smooth Muscle	stomach
50	chr8:118859400-118860200	Enhancers	NHEK	skin

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