Variant report

Variant	rs11562766
Chromosome Location	chr8:119049319-119049320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088632	1.00[CEU][hapmap]
rs10109062	1.00[CEU][hapmap]
rs11562697	0.90[YRI][hapmap]
rs11562730	1.00[CEU][hapmap]
rs11562739	1.00[AMR][1000 genomes]
rs11562757	1.00[CEU][hapmap]
rs17474839	1.00[CEU][hapmap]
rs17475323	1.00[CEU][hapmap]
rs17475358	1.00[CEU][hapmap]
rs17475365	1.00[CEU][hapmap]
rs17475694	1.00[CEU][hapmap]
rs17475722	1.00[CEU][hapmap]
rs17475743	1.00[CEU][hapmap]
rs17475785	1.00[CEU][hapmap]
rs17475918	1.00[CEU][hapmap]
rs17476247	1.00[CEU][hapmap]
rs17477049	1.00[CEU][hapmap]
rs17504170	1.00[CEU][hapmap]
rs17504205	1.00[CEU][hapmap]
rs17504743	1.00[CEU][hapmap]
rs17505079	1.00[CEU][hapmap]
rs4377987	1.00[CEU][hapmap]
rs4556109	1.00[CEU][hapmap]
rs6984750	1.00[CEU][hapmap]
rs7015149	1.00[AMR][1000 genomes]
rs73325953	1.00[AMR][1000 genomes]
rs7357537	1.00[CEU][hapmap]
rs7462118	1.00[CEU][hapmap]
rs7829932	0.90[YRI][hapmap]
rs7840905	1.00[AMR][1000 genomes]
rs7841107	1.00[AMR][1000 genomes]
rs9297572	1.00[CEU][hapmap]
rs9656924	1.00[CEU][hapmap]
rs9792392	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119040600-119052600	Weak transcription	Left Ventricle	heart
2	chr8:119041400-119049800	Enhancers	NHDF-Ad	bronchial
3	chr8:119041800-119049800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:119042400-119052000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:119043200-119050800	Enhancers	HMEC	breast
6	chr8:119043400-119054400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:119043400-119054400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:119044400-119051200	Weak transcription	Fetal Kidney	kidney
9	chr8:119044600-119049400	Weak transcription	Liver	Liver
10	chr8:119044600-119056600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:119044800-119053000	Weak transcription	Fetal Intestine Large	intestine
12	chr8:119046400-119051200	Enhancers	NHLF	lung
13	chr8:119046600-119049400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:119046600-119049600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:119046600-119051000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:119046800-119049600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:119047000-119049400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:119047000-119049600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:119047000-119050600	Weak transcription	Right Atrium	heart
20	chr8:119047000-119055200	Weak transcription	Psoas Muscle	Psoas
21	chr8:119047000-119055400	Weak transcription	Fetal Heart	heart
22	chr8:119047000-119061000	Weak transcription	Primary T cells from cord blood	blood
23	chr8:119047200-119049800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:119047200-119051200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:119047200-119052400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:119047200-119060400	Weak transcription	Stomach Mucosa	stomach
27	chr8:119047400-119051000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:119047600-119049400	Weak transcription	Esophagus	oesophagus
29	chr8:119047600-119052600	Weak transcription	Ovary	ovary
30	chr8:119047600-119053000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:119047600-119054400	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:119047600-119054400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:119047600-119059000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:119048000-119049800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:119048000-119050600	Weak transcription	Aorta	Aorta
36	chr8:119048000-119051400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:119048000-119051800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:119048200-119049800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:119048400-119049800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:119048400-119050400	Enhancers	Pancreas	Pancrea
41	chr8:119048400-119051200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:119048400-119055000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:119048600-119049400	Genic enhancers	HSMM	muscle
44	chr8:119048600-119049600	Weak transcription	A549	lung
45	chr8:119048600-119051200	Enhancers	Osteobl	bone
46	chr8:119048600-119052000	Weak transcription	Fetal Lung	lung
47	chr8:119048600-119055600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:119048600-119063800	Weak transcription	HSMMtube	muscle
49	chr8:119048800-119049600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr8:119049000-119049400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links