Variant report

Variant	rs10109289
Chromosome Location	chr8:114432734-114432735
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10106338	1.00[AMR][1000 genomes]
rs10107745	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1020968	1.00[YRI][hapmap]
rs10216929	1.00[AMR][1000 genomes]
rs10283068	1.00[AMR][1000 genomes]
rs12334661	1.00[AMR][1000 genomes]
rs16884610	1.00[YRI][hapmap]
rs16884620	1.00[YRI][hapmap]
rs16884622	1.00[YRI][hapmap]
rs16884683	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892652	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28436273	1.00[AMR][1000 genomes]
rs6989956	1.00[AMR][1000 genomes]
rs6990249	1.00[AMR][1000 genomes]
rs7003003	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034533	chr8:114413358-114436712	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020674	chr8:114413358-114439498	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2761461	chr8:114420164-114462173	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114430800-114433400	Weak transcription	Brain Substantia Nigra	brain
2	chr8:114431000-114434600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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