Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRPS1-4	chr8:114321434-114327022	NONHSAT128345

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10091328	1.00[YRI][hapmap]
rs10104356	1.00[YRI][hapmap]
rs10106338	1.00[AMR][1000 genomes]
rs10107307	1.00[YRI][hapmap]
rs10107745	1.00[AMR][1000 genomes]
rs10109289	1.00[AMR][1000 genomes]
rs10109842	1.00[YRI][hapmap]
rs10216929	1.00[AMR][1000 genomes]
rs11998052	1.00[YRI][hapmap]
rs1402941	1.00[YRI][hapmap]
rs1478674	1.00[YRI][hapmap]
rs16884563	1.00[YRI][hapmap]
rs16884683	1.00[AMR][1000 genomes]
rs16892652	1.00[AMR][1000 genomes]
rs6989956	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990249	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003003	1.00[AMR][1000 genomes]
rs7818333	1.00[YRI][hapmap]
rs7820746	1.00[YRI][hapmap]
rs9297489	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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