Variant report
| Variant | rs10091328 |
|---|---|
| Chromosome Location | chr8:114380612-114380613 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10104356 | 1.00[YRI][hapmap] |
| rs10106338 | 1.00[AMR][1000 genomes] |
| rs10107307 | 1.00[YRI][hapmap] |
| rs10107745 | 1.00[AMR][1000 genomes] |
| rs10109289 | 1.00[AMR][1000 genomes] |
| rs10109842 | 1.00[YRI][hapmap] |
| rs10216929 | 1.00[AMR][1000 genomes] |
| rs10283068 | 1.00[AMR][1000 genomes] |
| rs11998052 | 1.00[YRI][hapmap] |
| rs1402941 | 1.00[YRI][hapmap] |
| rs1478674 | 1.00[YRI][hapmap] |
| rs16884563 | 1.00[YRI][hapmap] |
| rs16884683 | 1.00[AMR][1000 genomes] |
| rs16892652 | 1.00[AMR][1000 genomes] |
| rs6989956 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6990249 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7003003 | 1.00[AMR][1000 genomes] |
| rs7818333 | 1.00[YRI][hapmap] |
| rs7820746 | 1.00[YRI][hapmap] |
| rs9297489 | 1.00[YRI][hapmap] |
| rs9297491 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv817379 | chr8:114338391-115011632 | Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2754463 | chr8:114353649-114501547 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019362 | chr8:114377031-114419106 | Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
