Variant report

Variant	rs10109640
Chromosome Location	chr8:96155426-96155427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:95908668..95910800-chr8:96154652..96156749,2	MCF-7	breast:
2	chr8:96147985..96151996-chr8:96154918..96159037,6	K562	blood:
3	chr8:96153632..96156778-chr8:96178221..96180911,3	MCF-7	breast:
4	chr8:96123364..96125766-chr8:96152623..96155722,3	MCF-7	breast:
5	chr8:96153588..96155770-chr8:96188109..96190496,2	MCF-7	breast:
6	chr8:96143887..96147830-chr8:96154836..96159559,5	K562	blood:
7	chr8:96154262..96156511-chr8:96173163..96174743,2	MCF-7	breast:
8	chr3:24631555..24633388-chr8:96154726..96156328,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000175305	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10088488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099012	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10956939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989019	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11994118	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334474	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561716	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28417924	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28431240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28470215	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28512193	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28704607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419720	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58536083	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60144755	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60355917	0.81[EUR][1000 genomes]
rs7827540	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7842028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7842334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv891207	chr8:96106037-96160914	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96147200-96172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96147800-96172200	Weak transcription	HSMM	muscle
3	chr8:96148400-96162000	Weak transcription	Lung	lung
4	chr8:96148400-96163600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:96148400-96171600	Weak transcription	Fetal Stomach	stomach
6	chr8:96148600-96161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:96149200-96159600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:96150200-96166600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:96150200-96166600	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:96150200-96166600	Weak transcription	Placenta	Placenta
11	chr8:96150400-96155600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:96150400-96155800	Weak transcription	HMEC	breast
13	chr8:96150400-96161600	Weak transcription	Fetal Heart	heart
14	chr8:96150400-96162000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:96150400-96162000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:96150400-96166600	Weak transcription	Ovary	ovary
17	chr8:96150400-96169000	Weak transcription	Fetal Kidney	kidney
18	chr8:96150400-96169000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:96150400-96179200	Weak transcription	Fetal Lung	lung
20	chr8:96151200-96156600	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:96151200-96157400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:96151800-96157200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr8:96152600-96158000	Weak transcription	A549	lung
24	chr8:96152600-96162000	Weak transcription	Aorta	Aorta
25	chr8:96152600-96162000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:96152600-96162000	Weak transcription	Hela-S3	cervix
27	chr8:96152600-96163000	Weak transcription	Fetal Intestine Large	intestine
28	chr8:96152800-96161800	Weak transcription	Brain Anterior Caudate	brain
29	chr8:96152800-96166400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:96153000-96155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:96153000-96155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:96153000-96155600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr8:96153000-96155800	Weak transcription	Small Intestine	intestine
34	chr8:96153000-96156000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr8:96153000-96156800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr8:96153000-96157600	Weak transcription	Pancreas	Pancrea
37	chr8:96153000-96157800	Weak transcription	Stomach Mucosa	stomach
38	chr8:96153000-96162800	Weak transcription	Fetal Intestine Small	intestine
39	chr8:96153000-96165400	Weak transcription	Thymus	Thymus
40	chr8:96153000-96166600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr8:96153000-96166600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:96153200-96157400	Weak transcription	K562	blood
43	chr8:96153200-96157600	Weak transcription	HepG2	liver
44	chr8:96153400-96163600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr8:96153600-96155600	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:96153600-96157400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr8:96153600-96163000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr8:96153800-96155600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr8:96153800-96157200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:96153800-96158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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