Variant report

Variant	rs60355917
Chromosome Location	chr8:96175626-96175627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96174791..96177726-chr8:96179691..96182819,4	K562	blood:
2	chr8:96173200..96176100-chr8:96203502..96205695,2	MCF-7	breast:
3	chr8:96086411..96088637-chr8:96175258..96177265,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10088488	0.81[EUR][1000 genomes]
rs10092259	0.81[EUR][1000 genomes]
rs10099012	0.81[EUR][1000 genomes]
rs10109640	0.81[EUR][1000 genomes]
rs10956939	0.81[EUR][1000 genomes]
rs11985227	0.81[EUR][1000 genomes]
rs11987616	0.81[EUR][1000 genomes]
rs11994118	0.81[EUR][1000 genomes]
rs12334474	0.81[EUR][1000 genomes]
rs12335131	0.81[EUR][1000 genomes]
rs28431240	0.81[EUR][1000 genomes]
rs28470215	0.92[EUR][1000 genomes]
rs28512193	0.81[EUR][1000 genomes]
rs28704607	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv819397	chr8:96168255-96177678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96150400-96179200	Weak transcription	Fetal Lung	lung
2	chr8:96162400-96178800	Weak transcription	NH-A	brain
3	chr8:96167200-96178600	Weak transcription	Right Ventricle	heart
4	chr8:96167200-96179200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:96167200-96179400	Weak transcription	Brain Angular Gyrus	brain
6	chr8:96167200-96179600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:96167200-96179600	Weak transcription	Left Ventricle	heart
8	chr8:96167200-96181600	Weak transcription	Small Intestine	intestine
9	chr8:96167400-96179600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:96167600-96180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:96167600-96181400	Weak transcription	Liver	Liver
12	chr8:96169400-96181000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:96169600-96176000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:96169800-96175800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:96169800-96175800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:96170000-96180200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr8:96170200-96179600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:96170200-96181000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:96171800-96179400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:96172200-96182600	Enhancers	Primary B cells from peripheral blood	blood
21	chr8:96172400-96178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr8:96172400-96179200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:96172400-96179200	Weak transcription	Fetal Brain Female	brain
24	chr8:96172400-96180600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:96172400-96181600	Weak transcription	Lung	lung
26	chr8:96172600-96175800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:96172600-96175800	Weak transcription	Thymus	Thymus
28	chr8:96172600-96177000	Enhancers	Primary B cells from cord blood	blood
29	chr8:96172600-96177400	Weak transcription	Aorta	Aorta
30	chr8:96172600-96177600	Weak transcription	Brain Germinal Matrix	brain
31	chr8:96172600-96177800	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:96172600-96179200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:96172600-96179200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:96172600-96179200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:96172600-96179400	Weak transcription	Esophagus	oesophagus
36	chr8:96172600-96180600	Weak transcription	Fetal Intestine Small	intestine
37	chr8:96172600-96181000	Weak transcription	Spleen	Spleen
38	chr8:96172600-96181800	Weak transcription	Pancreas	Pancrea
39	chr8:96172600-96186400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:96172600-96186800	Weak transcription	Gastric	stomach
41	chr8:96173800-96176400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr8:96174200-96176400	Enhancers	Primary hematopoietic stem cells	blood
43	chr8:96174400-96176200	Enhancers	Primary T cells from cord blood	blood
44	chr8:96174400-96176200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr8:96174600-96175800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:96174600-96175800	Weak transcription	Fetal Thymus	thymus
47	chr8:96174600-96176200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:96174800-96176200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr8:96175000-96179400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:96175200-96179400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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