Variant report

Variant	rs1010981
Chromosome Location	chr12:10214318-10214319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1074059	0.86[JPT][hapmap]
rs10772230	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10845023	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10845026	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10845028	0.90[JPT][hapmap]
rs10845029	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11053608	1.00[YRI][hapmap]
rs12829123	1.00[YRI][hapmap]
rs1488818	0.90[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs4399401	0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7297150	0.92[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs7297681	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7309123	1.00[YRI][hapmap]
rs7315231	0.92[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs7959064	0.80[YRI][hapmap]
rs7972323	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524870	chr12:10209711-10219885	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1010981	GPRC5D	cis	parietal	SCAN
rs1010981	NCAPD2	cis	parietal	SCAN
rs1010981	POU5F1P3	cis	parietal	SCAN
rs1010981	TAS2R43	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10212800-10217600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr12:10213600-10215800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:10213800-10215800	Strong transcription	Primary hematopoietic stem cells	blood
4	chr12:10214200-10215800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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