Variant report

Variant	rs7297681
Chromosome Location	chr12:10211432-10211433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1010981	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505749	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1074059	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1074060	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10845023	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845026	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10845028	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1488818	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4399401	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6488246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7132536	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7315231	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7972323	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524870	chr12:10209711-10219885	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10207800-10211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:10208000-10213800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:10211400-10211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:10211400-10212200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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