Variant report

Variant	rs7132536
Chromosome Location	chr12:10221321-10221322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10221146..10223994-chr12:10224373..10226015,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1010981	0.92[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs10505749	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1074059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1074060	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10772230	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10845026	0.83[EUR][1000 genomes]
rs10845028	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845029	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1488818	0.85[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4399401	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4764227	0.85[EUR][1000 genomes]
rs6488246	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7297150	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7297681	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7305222	0.83[EUR][1000 genomes]
rs7315231	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7972323	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7132536	LRRC23	cis	cerebellum	SCAN
rs7132536	POU5F1P3	cis	parietal	SCAN
rs7132536	TAS2R43	cis	cerebellum	SCAN
rs7132536	LOC653113	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10218000-10222000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10219000-10222600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:10219000-10236800	Weak transcription	Left Ventricle	heart
4	chr12:10219200-10221600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:10219600-10221600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:10220000-10221600	Enhancers	Brain Substantia Nigra	brain
7	chr12:10220000-10223000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr12:10220200-10222000	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr12:10220200-10222000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:10220400-10222200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr12:10220600-10221400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:10220600-10222000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:10220600-10222800	Enhancers	Primary B cells from peripheral blood	blood
14	chr12:10220800-10221400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr12:10220800-10234800	Weak transcription	Placenta	Placenta
16	chr12:10221000-10221400	Enhancers	Brain Anterior Caudate	brain
17	chr12:10221000-10221400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr12:10221000-10221400	Flanking Active TSS	HUVEC	blood vessel
19	chr12:10221000-10221800	Enhancers	Adipose Nuclei	Adipose
20	chr12:10221200-10221400	Active TSS	Primary B cells from cord blood	blood
21	chr12:10221200-10222000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:10221200-10222400	Enhancers	Hela-S3	cervix
23	chr12:10221200-10222600	Enhancers	Colon Smooth Muscle	Colon
24	chr12:10221200-10223400	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links