Variant report

Variant	rs10109993
Chromosome Location	chr8:113589103-113589104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10102321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11776962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11783840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11985551	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12550418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12676958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13250246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13252957	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs13256001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13265554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13277805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13278199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1453091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4258032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4295688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4313186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4366101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4389971	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4480145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4486235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4492408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4579554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4595152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4599841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4599842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4876473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4876477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6469423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6469427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6983512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7011495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7017061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7386760	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7459526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7462669	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7463547	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7463638	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7464466	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7819734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7821241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7823392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7825574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9642816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9694554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831427	chr8:113494319-113699264	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113555600-113594000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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