Variant report

Variant	rs10111116
Chromosome Location	chr1:177958546-177958547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13439156	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2467210	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60441607	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72681019	0.88[AMR][1000 genomes]
rs7820496	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012990	chr1:177498021-178479164	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv535214	chr1:177498021-178479164	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv548252	chr1:177728057-178397919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:177934200-177968400	Weak transcription	Esophagus	oesophagus
2	chr1:177939200-177966400	Weak transcription	Right Ventricle	heart
3	chr1:177940000-177966600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:177940200-177975000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:177950600-177961400	Weak transcription	Left Ventricle	heart
6	chr1:177953400-177965600	Weak transcription	Fetal Intestine Small	intestine
7	chr1:177953600-177965000	Weak transcription	Psoas Muscle	Psoas
8	chr1:177953600-177976200	Weak transcription	Adipose Nuclei	Adipose
9	chr1:177953600-177976400	Weak transcription	Aorta	Aorta
10	chr1:177953600-177986000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:177953600-178006400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:177953800-177964600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:177953800-177964800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:177954400-177961600	Weak transcription	Liver	Liver
15	chr1:177954600-177976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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