Variant report

Variant	rs13439156
Chromosome Location	chr8:85634807-85634808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10089129	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10089908	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10093758	0.84[EUR][1000 genomes]
rs10096903	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10103165	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10105150	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10111116	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10112163	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10504807	0.84[CHB][hapmap]
rs11985369	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11988092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11989750	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs11989787	0.81[ASN][1000 genomes]
rs1252202	0.82[EUR][1000 genomes]
rs1252209	0.83[EUR][1000 genomes]
rs1252210	0.85[EUR][1000 genomes]
rs1252220	0.84[EUR][1000 genomes]
rs1252221	0.82[EUR][1000 genomes]
rs1252222	0.84[EUR][1000 genomes]
rs1268561	0.84[EUR][1000 genomes]
rs1268562	0.85[EUR][1000 genomes]
rs1346287	0.80[JPT][hapmap]
rs1346288	0.80[JPT][hapmap]
rs1351724	0.86[EUR][1000 genomes]
rs1483354	0.85[EUR][1000 genomes]
rs1488701	0.80[JPT][hapmap]
rs1488704	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1488706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1565225	0.84[CHB][hapmap]
rs1681355	0.86[EUR][1000 genomes]
rs16913090	0.84[CHB][hapmap]
rs1730826	0.85[EUR][1000 genomes]
rs17794302	0.90[EUR][1000 genomes]
rs17794614	0.84[CHB][hapmap]
rs2465980	0.90[CHB][hapmap]
rs2465981	0.80[JPT][hapmap]
rs2467210	0.84[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2467211	0.80[JPT][hapmap]
rs2634042	0.84[CHB][hapmap]
rs2634044	0.84[CHB][hapmap]
rs2634046	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2634047	0.84[CHB][hapmap]
rs2634049	0.80[JPT][hapmap]
rs2634052	0.80[JPT][hapmap]
rs2634053	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634054	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634055	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634056	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2634057	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634058	0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634059	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2634060	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2634061	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2634066	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2634067	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs2634068	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2634069	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs2718964	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2718968	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs2718969	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs2718970	0.84[CHB][hapmap]
rs2718971	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs2718972	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2718973	0.84[CHB][hapmap]
rs2718974	0.84[CHB][hapmap]
rs2718975	0.83[CHB][hapmap]
rs2718979	0.80[JPT][hapmap]
rs2718983	0.80[JPT][hapmap]
rs2718984	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2718985	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2718986	0.84[CHB][hapmap]
rs2718987	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs28405987	0.85[EUR][1000 genomes]
rs28676726	0.92[EUR][1000 genomes]
rs28760488	0.88[EUR][1000 genomes]
rs2930064	0.86[EUR][1000 genomes]
rs56165928	0.92[EUR][1000 genomes]
rs56335539	0.88[EUR][1000 genomes]
rs60441607	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473557	0.80[JPT][hapmap]
rs66683633	0.90[EUR][1000 genomes]
rs67135531	0.81[ASN][1000 genomes]
rs6986632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6986989	0.80[JPT][hapmap]
rs6987270	0.80[JPT][hapmap]
rs6988126	0.89[JPT][hapmap]
rs7014897	0.92[EUR][1000 genomes]
rs72681013	0.95[EUR][1000 genomes]
rs72681019	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs729076	0.84[CHB][hapmap]
rs7815917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7819269	0.88[EUR][1000 genomes]
rs7820496	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7834016	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7840920	0.84[CHB][hapmap]
rs9298427	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs957815	0.81[ASN][1000 genomes]
rs957816	0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9886561	0.84[CHB][hapmap]
rs9886620	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9987099	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85634200-85635200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:85634800-85635800	Weak transcription	NH-A	brain

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