Variant report

Variant	rs2465981
Chromosome Location	chr8:85706515-85706516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1006976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10089129	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10089908	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs10093758	0.85[EUR][1000 genomes]
rs10096903	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs10103165	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10105150	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10112163	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10504808	0.82[CEU][hapmap]
rs10958225	0.82[CEU][hapmap]
rs10958227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11985369	0.91[CEU][hapmap]
rs11989750	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989787	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13439156	0.80[JPT][hapmap]
rs1346287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1346288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1427051	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1427052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1488701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1488706	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs1565225	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681355	0.82[CEU][hapmap]
rs16913056	0.82[CEU][hapmap]
rs16913090	0.82[CEU][hapmap]
rs17794266	0.81[CEU][hapmap]
rs17794614	0.82[CEU][hapmap]
rs1863646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465975	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465976	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465977	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2465978	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2465979	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465980	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2467210	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2467211	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2634042	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634043	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634044	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634045	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634046	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634047	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes]
rs2634048	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634050	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2634051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634053	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634054	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634055	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634056	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2634057	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634058	0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634059	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634060	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2634061	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2634062	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2634063	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2634064	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2634065	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2634066	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2634067	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634068	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2634069	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718963	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718964	0.93[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718965	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718967	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718968	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718969	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718970	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718971	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718972	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718973	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718974	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718975	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718976	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2718977	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718980	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718982	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2718984	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718985	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718986	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs2718987	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28405987	0.86[EUR][1000 genomes]
rs4302839	0.82[CEU][hapmap]
rs60441607	0.80[EUR][1000 genomes]
rs6473557	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67135531	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6986632	0.91[CEU][hapmap]
rs6986989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs6987270	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs6988126	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs6996709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6997041	0.82[CEU][hapmap]
rs6998597	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010348	0.82[CEU][hapmap]
rs7014897	0.82[CEU][hapmap]
rs7815917	0.91[CEU][hapmap]
rs7819269	0.82[CEU][hapmap]
rs7820496	0.89[EUR][1000 genomes]
rs7831433	0.91[CEU][hapmap]
rs7841984	0.81[CEU][hapmap]
rs7842614	0.82[CEU][hapmap]
rs901918	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298427	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs957815	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs957816	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9886561	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891116	chr8:85660437-85792472	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1033771	chr8:85697942-85720299	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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