Variant report

Variant	rs2634055
Chromosome Location	chr8:85677262-85677263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85637881..85639538-chr8:85676216..85677896,2	K562	blood:

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1006976	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs10089129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10089908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10093758	0.89[EUR][1000 genomes]
rs10096903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10103165	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10105150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10504808	0.82[CEU][hapmap]
rs10958225	0.82[CEU][hapmap]
rs10958227	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs11985369	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11988092	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11989750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989787	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252204	0.82[CEU][hapmap]
rs1252211	0.84[CEU][hapmap]
rs1252215	0.82[CEU][hapmap]
rs1252221	0.82[CEU][hapmap]
rs1252223	0.82[CEU][hapmap]
rs13439156	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1346287	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1346288	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1427051	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1427052	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1483353	0.82[CEU][hapmap]
rs1483354	0.82[CEU][hapmap]
rs1488701	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1488704	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1488706	0.91[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs1565225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1681355	0.82[CEU][hapmap]
rs16913056	0.82[CEU][hapmap]
rs16913090	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1730827	0.82[CEU][hapmap]
rs17794266	0.81[CEU][hapmap]
rs17794614	0.82[CEU][hapmap]
rs1863646	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2465975	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465976	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465977	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2465978	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2465979	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465981	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2467210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467211	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2467212	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2634042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634043	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634045	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634046	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634047	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2634048	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634049	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634050	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2634051	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634052	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2634053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2634061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2634062	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634063	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634064	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634065	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634068	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2634069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718963	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718964	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718965	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718967	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718969	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718974	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2718975	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718976	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs2718977	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718978	0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718979	0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718980	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718981	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718982	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2718983	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2718984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs2718987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405987	0.90[EUR][1000 genomes]
rs2970009	0.82[CEU][hapmap]
rs4302839	0.82[CEU][hapmap]
rs60441607	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6473557	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs67135531	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986632	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6986989	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs6987270	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6988126	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6996709	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs6997041	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6998597	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7010348	0.82[CEU][hapmap]
rs7014897	0.82[CEU][hapmap]
rs7815917	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7819269	0.82[CEU][hapmap]
rs7820496	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7831433	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7834016	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7841984	0.81[CEU][hapmap]
rs7842614	0.82[CEU][hapmap]
rs901918	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9298427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957815	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886561	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs9886620	0.84[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891115	chr8:85643564-85694505	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv891116	chr8:85660437-85792472	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85676400-85677400	Enhancers	NH-A	brain
2	chr8:85676400-85678400	Enhancers	Primary T cells from cord blood	blood
3	chr8:85676800-85677400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:85676800-85677400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:85676800-85677600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:85676800-85677600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:85676800-85677800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:85676800-85677800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:85676800-85677800	Enhancers	Fetal Thymus	thymus
10	chr8:85677000-85677400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:85677200-85677400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:85677200-85677600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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