Variant report

Variant	rs9886620
Chromosome Location	chr8:85653792-85653793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1006976	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs10089129	0.83[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs10089908	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs10094897	0.84[CHB][hapmap]
rs10096903	0.82[ASW][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.89[MKK][hapmap]
rs10103165	0.83[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs10104232	0.84[CHB][hapmap]
rs10105150	0.84[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs10109730	0.84[CHB][hapmap]
rs10111116	0.91[ASN][1000 genomes]
rs10112163	0.83[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap]
rs10504807	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap]
rs10504808	0.84[CHB][hapmap]
rs10958225	0.84[CHB][hapmap]
rs10958227	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs11985369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11988092	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs11989750	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs11989787	0.85[AFR][1000 genomes]
rs13439156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1351724	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs1427051	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs1427052	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs1466522	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs1488704	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1488706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1565225	0.84[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap]
rs16913056	0.84[CHB][hapmap]
rs16913090	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs17794266	0.90[CHB][hapmap]
rs17794302	0.84[CHB][hapmap]
rs17794614	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs1842962	0.81[CHD][hapmap];0.81[GIH][hapmap]
rs1863646	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs2220426	0.84[CHB][hapmap]
rs2465980	0.90[CHB][hapmap]
rs2467210	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2467212	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs2634042	0.84[CHB][hapmap]
rs2634044	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap]
rs2634046	0.83[CHB][hapmap]
rs2634047	0.84[CHB][hapmap];0.81[GIH][hapmap]
rs2634048	0.86[CHD][hapmap];0.85[GIH][hapmap]
rs2634051	0.91[GIH][hapmap]
rs2634053	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs2634054	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2634055	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2634056	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2634057	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2634058	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2634059	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2634060	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2634061	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs2634066	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2634067	0.91[CHB][hapmap]
rs2634068	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2634069	0.84[CHB][hapmap]
rs2718963	0.83[AFR][1000 genomes]
rs2718964	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2718968	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs2718969	0.84[CHB][hapmap]
rs2718970	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap]
rs2718971	0.84[CHB][hapmap]
rs2718972	0.84[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs2718973	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap]
rs2718974	0.84[CHB][hapmap]
rs2718975	0.83[CHB][hapmap]
rs2718984	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2718985	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2718986	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2718987	0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2930065	0.81[GIH][hapmap]
rs4416819	0.84[CHB][hapmap]
rs60441607	0.95[ASN][1000 genomes]
rs67135531	0.84[AFR][1000 genomes]
rs6986632	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs6988126	0.86[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap]
rs6996709	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs6997041	0.84[CHB][hapmap]
rs7010348	0.83[CHB][hapmap]
rs7014897	0.83[CHB][hapmap]
rs729076	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap]
rs7815917	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs7819269	0.84[CHB][hapmap]
rs7820496	0.95[ASN][1000 genomes]
rs7831433	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7834016	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7840920	0.84[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap]
rs7840925	0.84[CHB][hapmap]
rs7841984	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs9298427	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs957815	0.85[AFR][1000 genomes]
rs957816	0.93[ASW][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.96[MKK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9886561	0.84[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap]
rs9987099	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891115	chr8:85643564-85694505	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9886620	RALYL	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links