Variant report

Variant	rs28760488
Chromosome Location	chr8:85544274-85544275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85542893..85545480-chr8:86287576..86290240,2	MCF-7	breast:
2	chr8:85534205..85536062-chr8:85543701..85545825,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10093758	0.82[ASN][1000 genomes]
rs1252200	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1252202	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1252204	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252205	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252208	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252209	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252210	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252211	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252212	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252213	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252220	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252221	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252222	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1252225	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1268561	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1268562	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13439156	0.88[EUR][1000 genomes]
rs1351724	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1466522	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483353	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483354	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1626630	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681355	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16913056	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913090	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1730816	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1730824	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1730826	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1730827	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17794302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842962	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28405987	0.89[ASN][1000 genomes]
rs28446816	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28676726	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28695582	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2930064	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957790	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109781	0.91[ASN][1000 genomes]
rs4302839	0.94[ASN][1000 genomes]
rs56165928	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56335539	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60441607	0.84[EUR][1000 genomes]
rs66683633	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997041	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014897	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72681013	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72681019	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7819269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886561	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987099	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1017411	chr8:85536245-85596675	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85542600-85544400	Weak transcription	HSMM	muscle
2	chr8:85542800-85544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:85543000-85544400	Weak transcription	NHLF	lung
4	chr8:85543000-85544600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:85543000-85544600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:85543000-85544600	Weak transcription	NH-A	brain
7	chr8:85544200-85544800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:85544200-85546000	Enhancers	NHDF-Ad	bronchial
9	chr8:85544200-85546200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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