Variant report

Variant	rs1252225
Chromosome Location	chr8:85515109-85515110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10093758	0.86[EUR][1000 genomes]
rs10094897	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10104232	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10109730	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10112163	0.85[CEU][hapmap]
rs10504807	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10504808	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10958225	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11985369	0.87[CEU][hapmap]
rs11989750	0.85[CEU][hapmap]
rs1252199	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs1252200	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252202	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1252204	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1252205	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1252208	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1252209	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252212	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1252213	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1252215	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1252216	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1252217	0.86[CEU][hapmap];0.91[JPT][hapmap]
rs1252219	1.00[JPT][hapmap]
rs1252220	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252221	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252222	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1252223	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1252224	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1268561	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1268562	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1351724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1466522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483353	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1483354	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1488706	0.87[CEU][hapmap]
rs1488709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1626630	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681355	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16912908	0.81[JPT][hapmap]
rs16913056	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16913090	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1730816	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1730824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1730826	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1730827	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17726976	0.85[CEU][hapmap]
rs17794266	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17794302	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17794614	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1842962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220426	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs2718968	0.84[CEU][hapmap]
rs2718975	0.90[CEU][hapmap]
rs2718976	0.82[CEU][hapmap]
rs28405987	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28446816	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28676726	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28695582	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28760488	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2930064	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2930065	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2957790	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2970009	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs3101802	0.81[JPT][hapmap]
rs3109781	0.94[ASN][1000 genomes]
rs4302839	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4416819	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs56165928	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56335539	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66683633	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6986632	0.86[CEU][hapmap]
rs6988126	0.81[CEU][hapmap]
rs6997041	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7010348	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7014897	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72681013	0.90[ASN][1000 genomes]
rs729076	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7815917	0.86[CEU][hapmap]
rs7819269	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7820496	0.82[EUR][1000 genomes]
rs7828076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7831433	0.86[CEU][hapmap]
rs7840920	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7840925	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7841984	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7842614	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9886561	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987099	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85498200-85516400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:85513200-85516200	Weak transcription	Fetal Brain Male	brain
3	chr8:85513600-85516400	Weak transcription	Fetal Brain Female	brain
4	chr8:85513800-85515200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:85514800-85515800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:85514800-85515800	Weak transcription	Fetal Intestine Small	intestine
7	chr8:85514800-85516800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:85514800-85517000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:85514800-85517000	Enhancers	Liver	Liver
10	chr8:85515000-85515800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:85515000-85516800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:85515000-85518000	Weak transcription	Fetal Kidney	kidney

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