Variant report

Variant	rs1252224
Chromosome Location	chr8:85482081-85482082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10094897	1.00[JPT][hapmap]
rs10096903	0.80[GIH][hapmap]
rs10104232	1.00[JPT][hapmap]
rs10109730	1.00[JPT][hapmap]
rs10112163	0.85[CEU][hapmap]
rs10504807	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs10504808	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs10958225	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs11985369	0.87[CEU][hapmap]
rs11989750	0.85[CEU][hapmap]
rs1252199	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1252200	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252202	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252204	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252213	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1252215	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1252216	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1252217	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1252219	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1252220	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252221	1.00[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1252223	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1252225	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1268561	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439156	0.84[EUR][1000 genomes]
rs1351724	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1466522	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1483353	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483354	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1488706	0.87[CEU][hapmap]
rs1488709	1.00[JPT][hapmap]
rs1626630	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1681355	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16912908	0.81[JPT][hapmap]
rs16913056	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16913090	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1730816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730824	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730826	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1730827	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17726976	0.85[CEU][hapmap]
rs17794266	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17794302	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17794614	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs1842962	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2220426	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs28446816	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28676726	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28695582	0.94[ASN][1000 genomes]
rs28760488	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2930064	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2930065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]
rs2957790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970009	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3101802	0.81[JPT][hapmap]
rs3109781	0.99[ASN][1000 genomes]
rs4302839	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4416819	1.00[JPT][hapmap]
rs56165928	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56335539	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66683633	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6986632	0.86[CEU][hapmap];0.85[GIH][hapmap]
rs6988126	0.81[CEU][hapmap]
rs6997041	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7010348	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7014897	0.95[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72681013	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72681019	0.82[EUR][1000 genomes]
rs729076	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7815917	0.86[CEU][hapmap];0.80[GIH][hapmap]
rs7819269	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7828076	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7831433	0.86[CEU][hapmap]
rs7840920	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap]
rs7840925	1.00[JPT][hapmap]
rs7841984	0.91[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7842614	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs9886561	0.95[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9987099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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