Variant report

Variant	rs17726976
Chromosome Location	chr8:85597000-85597001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10504807	0.85[CEU][hapmap]
rs10504808	0.81[CEU][hapmap]
rs10958225	0.81[CEU][hapmap]
rs1252200	0.81[CEU][hapmap]
rs1252201	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs1252204	0.81[CEU][hapmap]
rs1252205	0.85[CEU][hapmap]
rs1252210	0.85[CEU][hapmap]
rs1252211	0.88[CEU][hapmap]
rs1252215	0.81[CEU][hapmap]
rs1252216	0.81[CEU][hapmap]
rs1252221	0.81[CEU][hapmap]
rs1252223	0.81[CEU][hapmap]
rs1252224	0.85[CEU][hapmap]
rs1252225	0.85[CEU][hapmap]
rs1268562	0.85[CEU][hapmap]
rs1351724	0.85[CEU][hapmap]
rs1466522	0.85[CEU][hapmap]
rs1483353	0.81[CEU][hapmap]
rs1483354	0.81[CEU][hapmap]
rs1681355	0.81[CEU][hapmap]
rs16913056	0.81[CEU][hapmap]
rs16913090	0.81[CEU][hapmap]
rs1730827	0.81[CEU][hapmap]
rs17794266	0.84[CEU][hapmap]
rs17794302	0.81[EUR][1000 genomes]
rs17794614	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs1842962	0.85[CEU][hapmap]
rs2220426	0.85[CEU][hapmap]
rs28676726	0.83[EUR][1000 genomes]
rs2930065	0.85[CEU][hapmap]
rs2970009	0.81[CEU][hapmap]
rs4302839	0.81[CEU][hapmap]
rs56165928	0.83[EUR][1000 genomes]
rs66683633	0.81[EUR][1000 genomes]
rs6997041	0.81[CEU][hapmap]
rs7010348	0.85[CEU][hapmap]
rs7014897	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs729076	0.85[CEU][hapmap]
rs7819269	0.81[CEU][hapmap]
rs7828076	0.85[CEU][hapmap]
rs7840920	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs7842614	0.81[CEU][hapmap]
rs9886561	0.81[CEU][hapmap]
rs9987099	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17726976	WWP1	cis	parietal	SCAN
rs17726976	RALYL	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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