Variant report

Variant	rs28676726
Chromosome Location	chr8:85619884-85619885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10093758	0.87[ASN][1000 genomes]
rs1252200	0.84[ASN][1000 genomes]
rs1252202	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1252204	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1252205	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1252208	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1252209	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252210	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252211	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252212	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1252213	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1252220	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252221	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252222	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1252225	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1268561	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1268562	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13439156	0.92[EUR][1000 genomes]
rs1351724	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1466522	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483353	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1483354	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1626630	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1681355	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16913056	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16913090	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1730816	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1730824	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1730826	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1730827	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17794302	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1842962	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2467210	0.81[EUR][1000 genomes]
rs28405987	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28446816	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28695582	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28760488	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2930064	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2957790	0.85[ASN][1000 genomes]
rs3109781	0.86[ASN][1000 genomes]
rs4302839	0.88[ASN][1000 genomes]
rs56165928	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56335539	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60441607	0.88[EUR][1000 genomes]
rs66683633	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6997041	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014897	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72681013	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681019	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7819269	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886561	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987099	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv427823	chr8:85538522-86009068	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831376	chr8:85577422-85726311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85618200-85621200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr8:85619600-85620000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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