Variant report

Variant	rs16912908
Chromosome Location	chr8:85396742-85396743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10094897	0.81[JPT][hapmap]
rs10104232	0.81[JPT][hapmap]
rs10109730	0.81[JPT][hapmap]
rs10504807	0.81[JPT][hapmap]
rs11998502	0.80[CHB][hapmap];0.87[CHD][hapmap]
rs1252199	0.81[JPT][hapmap]
rs1252200	0.81[JPT][hapmap]
rs1252202	0.81[JPT][hapmap]
rs1252204	0.81[JPT][hapmap]
rs1252205	0.81[JPT][hapmap]
rs1252208	0.81[JPT][hapmap]
rs1252209	0.81[JPT][hapmap]
rs1252210	0.81[JPT][hapmap]
rs1252211	0.81[JPT][hapmap]
rs1252212	0.81[JPT][hapmap]
rs1252215	0.81[JPT][hapmap]
rs1252216	0.81[JPT][hapmap]
rs1252219	0.81[JPT][hapmap]
rs1252221	0.81[JPT][hapmap]
rs1252223	0.81[JPT][hapmap]
rs1252224	0.81[JPT][hapmap]
rs1252225	0.81[JPT][hapmap]
rs1268562	0.81[JPT][hapmap]
rs1351724	0.81[JPT][hapmap]
rs1388419	0.80[CHB][hapmap]
rs1466522	0.81[JPT][hapmap]
rs1483353	0.81[JPT][hapmap]
rs1483354	0.81[JPT][hapmap]
rs1488709	0.81[JPT][hapmap]
rs1681355	0.81[JPT][hapmap]
rs16912767	0.87[CHD][hapmap]
rs16912770	0.80[CHB][hapmap]
rs16912822	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs16913056	0.81[JPT][hapmap]
rs16913090	0.81[JPT][hapmap]
rs16919777	0.80[CHB][hapmap]
rs1730816	0.81[JPT][hapmap]
rs1730827	0.81[JPT][hapmap]
rs17794302	0.81[JPT][hapmap]
rs1842962	0.81[JPT][hapmap]
rs2930065	0.81[JPT][hapmap]
rs2957790	0.81[JPT][hapmap]
rs2970009	0.81[JPT][hapmap]
rs3101802	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3108677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4302839	0.81[JPT][hapmap]
rs4416819	0.81[JPT][hapmap]
rs60690494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729076	0.81[JPT][hapmap]
rs73688495	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73688499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819269	0.81[JPT][hapmap]
rs7828076	0.81[JPT][hapmap]
rs7842614	0.81[JPT][hapmap]
rs9886561	0.81[JPT][hapmap]
rs9987099	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85394600-85397400	Enhancers	Liver	Liver

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