Variant report

Variant	rs16912770
Chromosome Location	chr8:85294571-85294572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85292926..85294703-chr8:85297924..85300749,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10504792	1.00[YRI][hapmap]
rs10504799	1.00[YRI][hapmap]
rs11998502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12675795	1.00[YRI][hapmap]
rs1388419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16912588	1.00[YRI][hapmap]
rs16912599	1.00[YRI][hapmap]
rs16912601	1.00[YRI][hapmap]
rs16912613	1.00[YRI][hapmap]
rs16912618	1.00[YRI][hapmap]
rs16912624	1.00[YRI][hapmap]
rs16912644	1.00[YRI][hapmap]
rs16912699	1.00[YRI][hapmap]
rs16912738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16912767	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16912783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16912822	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs16912908	0.80[CHB][hapmap]
rs16919777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3993398	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1030263	chr8:85293666-85332024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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