Variant report

Variant	rs16912822
Chromosome Location	chr8:85343552-85343553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11998502	0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1388419	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs16912699	0.80[CHD][hapmap]
rs16912738	1.00[JPT][hapmap]
rs16912767	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs16912770	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs16912783	1.00[JPT][hapmap]
rs16912908	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs16919777	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs3101802	0.82[CEU][hapmap];0.90[CHB][hapmap];0.85[TSI][hapmap]
rs3108677	0.82[EUR][1000 genomes]
rs60690494	0.86[EUR][1000 genomes]
rs73688495	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73688499	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85340000-85343600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:85340600-85343600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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